Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC6.39□□□□□ -1.39
SPTA1P02549 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC6.39□□□□□ -1.39
SPTA1P02549 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC6.39□□□□□ -1.39
SPTA1P02549 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC6.39□□□□□ -1.39
SPTA1P02549 OTX2-201ENST00000339475 3001 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SPTA1P02549 SLC16A4-203ENST00000437429 2372 ntTSL 2 BASIC6.39□□□□□ -1.39
SPTA1P02549 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC6.39□□□□□ -1.39
SPTA1P02549 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SPTA1P02549 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
SPTA1P02549 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SPTA1P02549 AC024132.1-201ENST00000382007 2509 ntTSL 2 BASIC6.39□□□□□ -1.39
SPTA1P02549 CRBN-203ENST00000432408 2203 ntAPPRIS ALT1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SPTA1P02549 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SPTA1P02549 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SPTA1P02549 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SPTA1P02549 BDNF-204ENST00000395980 4030 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SPTA1P02549 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC6.39□□□□□ -1.39
SPTA1P02549 SLC20A1P1-201ENST00000413906 956 ntBASIC6.39□□□□□ -1.39
SPTA1P02549 CHCHD3P1-201ENST00000425516 676 ntBASIC6.39□□□□□ -1.39
SPTA1P02549 GAPDHP48-201ENST00000436626 961 ntBASIC6.39□□□□□ -1.39
SPTA1P02549 TSACC-207ENST00000470342 601 ntTSL 2 BASIC6.39□□□□□ -1.39
SPTA1P02549 LINC01608-202ENST00000524283 561 ntTSL 4 BASIC6.39□□□□□ -1.39
SPTA1P02549 RPL41P2-201ENST00000544920 409 ntBASIC6.39□□□□□ -1.39
SPTA1P02549 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC6.39□□□□□ -1.39
SPTA1P02549 AC016180.1-201ENST00000567945 403 ntBASIC6.39□□□□□ -1.39
SPTA1P02549 AC139099.1-203ENST00000570366 607 ntTSL 3 BASIC6.39□□□□□ -1.39
SPTA1P02549 AL365223.1-201ENST00000574864 1297 ntBASIC6.39□□□□□ -1.39
SPTA1P02549 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.39□□□□□ -1.39
SPTA1P02549 FO681491.1-202ENST00000623392 737 ntBASIC6.39□□□□□ -1.39
SPTA1P02549 AC125603.4-201ENST00000621942 2699 ntBASIC6.39□□□□□ -1.39
SPTA1P02549 TCF12-206ENST00000543579 1809 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SPTA1P02549 GJC1-201ENST00000330514 3295 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
SPTA1P02549 TPD52-204ENST00000517427 2596 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SPTA1P02549 AC013391.3-201ENST00000567484 1456 ntBASIC6.39□□□□□ -1.39
SPTA1P02549 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 SLFN12L-201ENST00000260908 3119 ntAPPRIS P2 TSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 MID1-204ENST00000380782 3352 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 GDNF-208ENST00000620847 3638 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 PRRG1-201ENST00000378628 4493 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 IL6-202ENST00000401630 765 ntTSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 AL139806.1-201ENST00000403057 1002 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC6.38□□□□□ -1.39
SPTA1P02549 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC6.38□□□□□ -1.39
SPTA1P02549 AL353754.1-201ENST00000440219 340 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 AL024493.1-201ENST00000449217 833 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC6.38□□□□□ -1.39
SPTA1P02549 NXT1P1-201ENST00000458481 316 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 AC093870.1-201ENST00000506837 213 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC6.38□□□□□ -1.39
SPTA1P02549 AC027544.3-201ENST00000535082 757 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 TRIM42-201ENST00000286349 2539 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
SPTA1P02549 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 AC021054.1-201ENST00000537514 2338 ntTSL 2 BASIC6.38□□□□□ -1.39
SPTA1P02549 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 CASP14-201ENST00000427043 3241 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 NEDD1-201ENST00000266742 4046 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
SPTA1P02549 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 CNOT4-207ENST00000451834 3507 ntAPPRIS ALT1 TSL 2 BASIC6.38□□□□□ -1.39
SPTA1P02549 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SPTA1P02549 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
SPTA1P02549 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 AL031985.1-201ENST00000392713 418 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC6.38□□□□□ -1.39
SPTA1P02549 FIGN-202ENST00000409634 746 ntTSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 LIX1L-AS1-203ENST00000421764 287 ntTSL 2 BASIC6.38□□□□□ -1.39
SPTA1P02549 AC104698.1-201ENST00000435671 276 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.38□□□□□ -1.39
SPTA1P02549 PPP1R8P1-201ENST00000452549 1044 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 RN7SKP198-201ENST00000459286 306 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 RPL5P11-201ENST00000498068 893 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.38□□□□□ -1.39
SPTA1P02549 AC008906.1-201ENST00000512856 993 ntTSL 5 BASIC6.38□□□□□ -1.39
SPTA1P02549 IGKV2-19-201ENST00000518132 283 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC6.38□□□□□ -1.39
SPTA1P02549 AC008429.4-201ENST00000521201 182 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 MIR3614-201ENST00000581261 86 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC6.38□□□□□ -1.39
SPTA1P02549 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC6.38□□□□□ -1.39
SPTA1P02549 AC022467.1-201ENST00000614738 749 ntBASIC6.38□□□□□ -1.39
SPTA1P02549 PTP4A1-206ENST00000627002 447 ntTSL 5 BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms