RNA–Protein interactions for RNA: ENST00000425516.1

CHCHD3P1-201, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 1, humanhuman

BASIC

Gene CHCHD3P1, Length 676 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3P1-201ENST00000425516 AEBP2Q6ZN18 517 aaPredicted RBP21.46■■□□□ 1.03
CHCHD3P1-201ENST00000425516 CHIC1Q5VXU3 224 aa20.54■□□□□ 0.88
CHCHD3P1-201ENST00000425516 PHF23Q9BUL5 403 aaPredicted RBP18.16■□□□□ 0.5
CHCHD3P1-201ENST00000425516 SENP3Q9H4L4 574 aaPredicted RBP18.02■□□□□ 0.48
CHCHD3P1-201ENST00000425516 FOXD1Q16676 465 aa16.92■□□□□ 0.3
CHCHD3P1-201ENST00000425516 NISCHQ9Y2I1 1504 aa16.88■□□□□ 0.29
CHCHD3P1-201ENST00000425516 PLPPR3Q6T4P5 718 aa16.47■□□□□ 0.23
CHCHD3P1-201ENST00000425516 PPP6R1Q9UPN7 881 aa16.14■□□□□ 0.17
CHCHD3P1-201ENST00000425516 ADRA2BP18089 450 aa16.07■□□□□ 0.16
CHCHD3P1-201ENST00000425516 PIAS4Q8N2W9 510 aaPredicted RBP15.82■□□□□ 0.12
CHCHD3P1-201ENST00000425516 MSH5O43196 834 aa15.52■□□□□ 0.08
CHCHD3P1-201ENST00000425516 CCDC180Q9P1Z9 1646 aa14.88□□□□□ -0.03
CHCHD3P1-201ENST00000425516 POTEDQ86YR6 584 aa14.78□□□□□ -0.04
CHCHD3P1-201ENST00000425516 MAPK8IP2Q13387 824 aaPredicted RBP14.7□□□□□ -0.06
CHCHD3P1-201ENST00000425516 PPP4R3CPQ6ZMV5 832 aa14.56□□□□□ -0.08
CHCHD3P1-201ENST00000425516 SCAF1Q9H7N4 1312 aaKnown RBP14.41□□□□□ -0.1
CHCHD3P1-201ENST00000425516 DMRT2Q9Y5R5 561 aa14.4□□□□□ -0.1
CHCHD3P1-201ENST00000425516 ABCC9O60706 1549 aa14.4□□□□□ -0.1
CHCHD3P1-201ENST00000425516 CNKSR2Q8WXI2 1034 aa14.14□□□□□ -0.15
CHCHD3P1-201ENST00000425516 ZCCHC6Q5VYS8 1495 aaKnown RBP14.09□□□□□ -0.15
CHCHD3P1-201ENST00000425516 KCNA4P22459 653 aa14□□□□□ -0.17
CHCHD3P1-201ENST00000425516 HOXD11P31277 338 aaPredicted RBP13.99□□□□□ -0.17
CHCHD3P1-201ENST00000425516 DCAF1Q9Y4B6 1507 aa13.99□□□□□ -0.17
CHCHD3P1-201ENST00000425516 DCAF8L2P0C7V8 631 aa13.98□□□□□ -0.17
CHCHD3P1-201ENST00000425516 MYO15BQ96JP2 1530 aa13.98□□□□□ -0.17
CHCHD3P1-201ENST00000425516 NACADO15069 1562 aa13.97□□□□□ -0.17
CHCHD3P1-201ENST00000425516 NPM3O75607 178 aaKnown RBP13.94□□□□□ -0.18
CHCHD3P1-201ENST00000425516 NCBP3Q53F19 620 aaKnown RBP13.93□□□□□ -0.18
CHCHD3P1-201ENST00000425516 RNF216Q9NWF9 866 aaPredicted RBP13.93□□□□□ -0.18
CHCHD3P1-201ENST00000425516 RB1CC1Q8TDY2 1594 aa13.92□□□□□ -0.18
CHCHD3P1-201ENST00000425516 DCAF8L1A6NGE4 600 aa13.79□□□□□ -0.2
CHCHD3P1-201ENST00000425516 UNC13AQ9UPW8 1703 aa13.6□□□□□ -0.23
CHCHD3P1-201ENST00000425516 SCRIBQ14160 1630 aa13.58□□□□□ -0.24
CHCHD3P1-201ENST00000425516 BICRAQ9NZM4 1560 aa13.54□□□□□ -0.24
CHCHD3P1-201ENST00000425516 PABPN1Q86U42 306 aaKnown RBP eCLIP13.51□□□□□ -0.25
CHCHD3P1-201ENST00000425516 DNAJC5BQ9UF47 199 aa13.43□□□□□ -0.26
CHCHD3P1-201ENST00000425516 SHROOM4Q9ULL8 1493 aa13.41□□□□□ -0.26
CHCHD3P1-201ENST00000425516 RNF39Q9H2S5 420 aa13.38□□□□□ -0.27
CHCHD3P1-201ENST00000425516 SLC4A2P04920 1241 aa13.28□□□□□ -0.28
CHCHD3P1-201ENST00000425516 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.28□□□□□ -0.28
CHCHD3P1-201ENST00000425516 CACNB1Q02641 598 aaPredicted RBP13.19□□□□□ -0.3
CHCHD3P1-201ENST00000425516 SLC4A1APQ9BWU0 796 aaKnown RBP13.17□□□□□ -0.3
CHCHD3P1-201ENST00000425516 U3KPZ7 1027 aaPredicted RBP13.17□□□□□ -0.3
CHCHD3P1-201ENST00000425516 CECR2Q9BXF3 1484 aa13.15□□□□□ -0.3
CHCHD3P1-201ENST00000425516 EIF4G1Q04637 1599 aaKnown RBP13.14□□□□□ -0.31
CHCHD3P1-201ENST00000425516 C1QBPQ07021 282 aaKnown RBP13.1□□□□□ -0.31
CHCHD3P1-201ENST00000425516 BAZ1AQ9NRL2 1556 aaPredicted RBP13.04□□□□□ -0.32
CHCHD3P1-201ENST00000425516 SMARCA4P51532 1647 aa13.03□□□□□ -0.32
CHCHD3P1-201ENST00000425516 CC2D2AQ9P2K1 1620 aa13.02□□□□□ -0.32
CHCHD3P1-201ENST00000425516 MROH2BQ7Z745 1585 aa13.02□□□□□ -0.33
CHCHD3P1-201ENST00000425516 ZBTB22O15209 634 aa12.96□□□□□ -0.33
CHCHD3P1-201ENST00000425516 ATAD2BQ9ULI0 1458 aa12.95□□□□□ -0.34
CHCHD3P1-201ENST00000425516 RSF1Q96T23 1441 aaPredicted RBP12.95□□□□□ -0.34
CHCHD3P1-201ENST00000425516 PEG3Q9GZU2 1588 aa12.94□□□□□ -0.34
CHCHD3P1-201ENST00000425516 NCAPD3P42695 1498 aa12.92□□□□□ -0.34
CHCHD3P1-201ENST00000425516 SPINK5Q9NQ38 1064 aaPredicted RBP12.92□□□□□ -0.34
CHCHD3P1-201ENST00000425516 SMARCA2P51531 1590 aa12.9□□□□□ -0.35
CHCHD3P1-201ENST00000425516 WIZO95785 1651 aa12.86□□□□□ -0.35
CHCHD3P1-201ENST00000425516 HMGXB3Q12766 1538 aa12.84□□□□□ -0.35
CHCHD3P1-201ENST00000425516 FOXD4L1Q9NU39 408 aa12.84□□□□□ -0.35
CHCHD3P1-201ENST00000425516 BAZ1BQ9UIG0 1483 aaKnown RBP12.81□□□□□ -0.36
CHCHD3P1-201ENST00000425516 MYCNP04198 464 aaPredicted RBP12.77□□□□□ -0.37
CHCHD3P1-201ENST00000425516 CAPN15O75808 1086 aa12.76□□□□□ -0.37
CHCHD3P1-201ENST00000425516 TOP2AP11388 1531 aaKnown RBP12.73□□□□□ -0.37
CHCHD3P1-201ENST00000425516 SUPT5HO00267 1087 aaKnown RBP12.71□□□□□ -0.37
CHCHD3P1-201ENST00000425516 TRHP20396 242 aaPredicted RBP12.67□□□□□ -0.38
CHCHD3P1-201ENST00000425516 ATF5Q9Y2D1 282 aaPredicted RBP12.67□□□□□ -0.38
CHCHD3P1-201ENST00000425516 DSG3P32926 999 aa12.66□□□□□ -0.38
CHCHD3P1-201ENST00000425516 SAMD1Q6SPF0 538 aaPredicted RBP12.65□□□□□ -0.38
CHCHD3P1-201ENST00000425516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.64□□□□□ -0.39
CHCHD3P1-201ENST00000425516 HNRNPUL2Q1KMD3 747 aaKnown RBP12.64□□□□□ -0.39
CHCHD3P1-201ENST00000425516 CCDC88BA6NC98 1476 aa12.61□□□□□ -0.39
CHCHD3P1-201ENST00000425516 ABCB7O75027 752 aa12.59□□□□□ -0.39
CHCHD3P1-201ENST00000425516 EHMT2Q96KQ7 1210 aa12.59□□□□□ -0.39
CHCHD3P1-201ENST00000425516 CSRNP3Q8WYN3 585 aa12.58□□□□□ -0.4
CHCHD3P1-201ENST00000425516 CADPSQ9ULU8 1353 aa12.55□□□□□ -0.4
CHCHD3P1-201ENST00000425516 NESP48681 1621 aa12.54□□□□□ -0.4
CHCHD3P1-201ENST00000425516 ZNF219Q9P2Y4 722 aaPredicted RBP12.53□□□□□ -0.4
CHCHD3P1-201ENST00000425516 APLP2Q06481 763 aa12.52□□□□□ -0.41
CHCHD3P1-201ENST00000425516 CFTRP13569 1480 aa12.52□□□□□ -0.41
CHCHD3P1-201ENST00000425516 LAMC3Q9Y6N6 1575 aa12.51□□□□□ -0.41
CHCHD3P1-201ENST00000425516 PDS5BQ9NTI5 1447 aa12.43□□□□□ -0.42
CHCHD3P1-201ENST00000425516 POLA2Q14181 598 aa12.39□□□□□ -0.43
CHCHD3P1-201ENST00000425516 FANCD2Q9BXW9 1451 aa12.38□□□□□ -0.43
CHCHD3P1-201ENST00000425516 ERCC6Q03468 1493 aa12.35□□□□□ -0.43
CHCHD3P1-201ENST00000425516 PRDM2Q13029 1718 aa12.35□□□□□ -0.43
CHCHD3P1-201ENST00000425516 KIF21AQ7Z4S6 1674 aa12.35□□□□□ -0.43
CHCHD3P1-201ENST00000425516 ATXN8OSP0DMR3 200 aa12.32□□□□□ -0.44
CHCHD3P1-201ENST00000425516 CEP164Q9UPV0 1460 aa12.32□□□□□ -0.44
CHCHD3P1-201ENST00000425516 THOC2Q8NI27 1593 aaKnown RBP12.28□□□□□ -0.44
CHCHD3P1-201ENST00000425516 MRC2Q9UBG0 1479 aa12.27□□□□□ -0.44
CHCHD3P1-201ENST00000425516 URB2Q14146 1524 aaKnown RBP12.26□□□□□ -0.45
CHCHD3P1-201ENST00000425516 WDR62O43379 1518 aa12.24□□□□□ -0.45
CHCHD3P1-201ENST00000425516 TOPBP1Q92547 1522 aa12.21□□□□□ -0.46
CHCHD3P1-201ENST00000425516 ABCC8Q09428 1581 aa12.2□□□□□ -0.46
CHCHD3P1-201ENST00000425516 CUX2O14529 1486 aa12.2□□□□□ -0.46
CHCHD3P1-201ENST00000425516 DNMBPQ6XZF7 1577 aa12.19□□□□□ -0.46
CHCHD3P1-201ENST00000425516 CUX1P39880 1505 aa12.19□□□□□ -0.46
CHCHD3P1-201ENST00000425516 WRNQ14191 1432 aaPredicted RBP eCLIP12.17□□□□□ -0.46
CHCHD3P1-201ENST00000425516 SYNJ1O43426 1573 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms