RNA–Protein interactions for RNA: ENST00000620847.1

GDNF-208, Transcript of glial cell derived neurotrophic factor, humanhuman

TSL 1 (best) BASIC

Gene GDNF, Length 3,638 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDNF-208ENST00000620847 NISCHQ9Y2I1 1504 aa16.84■□□□□ 0.29
GDNF-208ENST00000620847 CCDC180Q9P1Z9 1646 aa14.39□□□□□ -0.11
GDNF-208ENST00000620847 ZCCHC6Q5VYS8 1495 aaKnown RBP14.27□□□□□ -0.13
GDNF-208ENST00000620847 SHROOM4Q9ULL8 1493 aa14.23□□□□□ -0.13
GDNF-208ENST00000620847 SUPT5HO00267 1087 aaKnown RBP13.96□□□□□ -0.17
GDNF-208ENST00000620847 DCAF1Q9Y4B6 1507 aa13.88□□□□□ -0.19
GDNF-208ENST00000620847 DCAF8L2P0C7V8 631 aa13.78□□□□□ -0.2
GDNF-208ENST00000620847 CHIC1Q5VXU3 224 aa13.65□□□□□ -0.22
GDNF-208ENST00000620847 MYO15BQ96JP2 1530 aa13.63□□□□□ -0.23
GDNF-208ENST00000620847 ABCC9O60706 1549 aa13.48□□□□□ -0.25
GDNF-208ENST00000620847 SCRIBQ14160 1630 aa13.39□□□□□ -0.27
GDNF-208ENST00000620847 HRCP23327 699 aa13.31□□□□□ -0.28
GDNF-208ENST00000620847 RSF1Q96T23 1441 aaPredicted RBP13.31□□□□□ -0.28
GDNF-208ENST00000620847 NACADO15069 1562 aa13.25□□□□□ -0.29
GDNF-208ENST00000620847 RB1CC1Q8TDY2 1594 aa13.21□□□□□ -0.3
GDNF-208ENST00000620847 LOC105371045A0A1W2PR82 267 aa13.2□□□□□ -0.3
GDNF-208ENST00000620847 PCGF6Q9BYE7 350 aa13.19□□□□□ -0.3
GDNF-208ENST00000620847 CECR2Q9BXF3 1484 aa13.1□□□□□ -0.31
GDNF-208ENST00000620847 MROH2BQ7Z745 1585 aa13.07□□□□□ -0.32
GDNF-208ENST00000620847 TRIM41Q8WV44 630 aa13.04□□□□□ -0.32
GDNF-208ENST00000620847 WIZO95785 1651 aa13.02□□□□□ -0.32
GDNF-208ENST00000620847 TRIM26Q12899 539 aaPredicted RBP12.99□□□□□ -0.33
GDNF-208ENST00000620847 BAZ1AQ9NRL2 1556 aaPredicted RBP12.98□□□□□ -0.33
GDNF-208ENST00000620847 PPARGC1BQ86YN6 1023 aaKnown RBP12.94□□□□□ -0.34
GDNF-208ENST00000620847 EIF4G1Q04637 1599 aaKnown RBP12.91□□□□□ -0.34
GDNF-208ENST00000620847 PELP1Q8IZL8 1130 aaKnown RBP12.9□□□□□ -0.34
GDNF-208ENST00000620847 UNC13AQ9UPW8 1703 aa12.88□□□□□ -0.35
GDNF-208ENST00000620847 FAM9AQ8IZU1 332 aaPredicted RBP12.88□□□□□ -0.35
GDNF-208ENST00000620847 SMARCA4P51532 1647 aa12.84□□□□□ -0.35
GDNF-208ENST00000620847 TOP2AP11388 1531 aaKnown RBP12.84□□□□□ -0.35
GDNF-208ENST00000620847 SMARCA2P51531 1590 aa12.76□□□□□ -0.37
GDNF-208ENST00000620847 CCDC88BA6NC98 1476 aa12.75□□□□□ -0.37
GDNF-208ENST00000620847 ZEB1P37275 1124 aaPredicted RBP12.73□□□□□ -0.37
GDNF-208ENST00000620847 EHMT2Q96KQ7 1210 aa12.72□□□□□ -0.37
GDNF-208ENST00000620847 ABCC8Q09428 1581 aa12.71□□□□□ -0.38
GDNF-208ENST00000620847 BICRAQ9NZM4 1560 aa12.68□□□□□ -0.38
GDNF-208ENST00000620847 PEG3Q9GZU2 1588 aa12.63□□□□□ -0.39
GDNF-208ENST00000620847 SOGA1O94964 1423 aa12.58□□□□□ -0.4
GDNF-208ENST00000620847 WRNQ14191 1432 aaPredicted RBP eCLIP12.58□□□□□ -0.4
GDNF-208ENST00000620847 EEA1Q15075 1411 aa12.57□□□□□ -0.4
GDNF-208ENST00000620847 PABPN1Q86U42 306 aaKnown RBP eCLIP12.55□□□□□ -0.4
GDNF-208ENST00000620847 CEP162Q5TB80 1403 aa12.53□□□□□ -0.4
GDNF-208ENST00000620847 TNIKQ9UKE5 1360 aa12.53□□□□□ -0.4
GDNF-208ENST00000620847 RUSC2Q8N2Y8 1516 aa12.52□□□□□ -0.41
GDNF-208ENST00000620847 SCAF1Q9H7N4 1312 aaKnown RBP12.51□□□□□ -0.41
GDNF-208ENST00000620847 CSRNP3Q8WYN3 585 aa12.49□□□□□ -0.41
GDNF-208ENST00000620847 ATAD2BQ9ULI0 1458 aa12.47□□□□□ -0.41
GDNF-208ENST00000620847 SYNJ1O43426 1573 aa12.46□□□□□ -0.41
GDNF-208ENST00000620847 GOLGA3Q08378 1498 aa12.46□□□□□ -0.41
GDNF-208ENST00000620847 BAZ1BQ9UIG0 1483 aaKnown RBP12.43□□□□□ -0.42
GDNF-208ENST00000620847 MYT1Q01538 1121 aa12.43□□□□□ -0.42
GDNF-208ENST00000620847 KIF21BO75037 1637 aa12.42□□□□□ -0.42
GDNF-208ENST00000620847 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.42□□□□□ -0.42
GDNF-208ENST00000620847 UBTFP17480 764 aaKnown RBP12.4□□□□□ -0.42
GDNF-208ENST00000620847 CCER1Q8TC90 406 aaPredicted RBP12.39□□□□□ -0.43
GDNF-208ENST00000620847 CEP164Q9UPV0 1460 aa12.39□□□□□ -0.43
GDNF-208ENST00000620847 TOP2BQ02880 1626 aa12.33□□□□□ -0.44
GDNF-208ENST00000620847 TTBK1Q5TCY1 1321 aaPredicted RBP12.33□□□□□ -0.44
GDNF-208ENST00000620847 BIVM-ERCC5R4GMW8 1640 aa12.31□□□□□ -0.44
GDNF-208ENST00000620847 CLIP1P30622 1438 aa12.29□□□□□ -0.44
GDNF-208ENST00000620847 ACIN1Q9UKV3 1341 aaKnown RBP12.29□□□□□ -0.44
GDNF-208ENST00000620847 RAPGEF2Q9Y4G8 1499 aa12.28□□□□□ -0.44
GDNF-208ENST00000620847 HMGXB3Q12766 1538 aa12.27□□□□□ -0.45
GDNF-208ENST00000620847 VPS8Q8N3P4 1428 aa12.26□□□□□ -0.45
GDNF-208ENST00000620847 NCAPD3P42695 1498 aa12.25□□□□□ -0.45
GDNF-208ENST00000620847 CENPBP07199 599 aaPredicted RBP12.22□□□□□ -0.45
GDNF-208ENST00000620847 ERICH3Q5RHP9 1530 aa12.22□□□□□ -0.45
GDNF-208ENST00000620847 NEUROD1Q13562 356 aa12.2□□□□□ -0.46
GDNF-208ENST00000620847 PRXQ9BXM0 1461 aa12.19□□□□□ -0.46
GDNF-208ENST00000620847 CUX1P39880 1505 aa12.18□□□□□ -0.46
GDNF-208ENST00000620847 DIEXFQ68CQ4 756 aaKnown RBP12.18□□□□□ -0.46
GDNF-208ENST00000620847 GTF3C3Q9Y5Q9 886 aa12.17□□□□□ -0.46
GDNF-208ENST00000620847 CFTRP13569 1480 aa12.15□□□□□ -0.46
GDNF-208ENST00000620847 PRDM2Q13029 1718 aa12.14□□□□□ -0.47
GDNF-208ENST00000620847 APLP2Q06481 763 aa12.13□□□□□ -0.47
GDNF-208ENST00000620847 ARAP1Q96P48 1450 aa12.12□□□□□ -0.47
GDNF-208ENST00000620847 HNRNPUL2Q1KMD3 747 aaKnown RBP12.12□□□□□ -0.47
GDNF-208ENST00000620847 KIF27Q86VH2 1401 aa12.1□□□□□ -0.47
GDNF-208ENST00000620847 ZNF316A6NFI3 1004 aaPredicted RBP12.1□□□□□ -0.47
GDNF-208ENST00000620847 RANGAP1P46060 587 aaPredicted RBP12.09□□□□□ -0.47
GDNF-208ENST00000620847 ARHGAP35Q9NRY4 1499 aa12.01□□□□□ -0.49
GDNF-208ENST00000620847 KANK4Q5T7N3 995 aaPredicted RBP12□□□□□ -0.49
GDNF-208ENST00000620847 RRBP1Q9P2E9 1410 aaKnown RBP12□□□□□ -0.49
GDNF-208ENST00000620847 CLSPNQ9HAW4 1339 aa11.99□□□□□ -0.49
GDNF-208ENST00000620847 CADPSQ9ULU8 1353 aa11.98□□□□□ -0.49
GDNF-208ENST00000620847 CUX2O14529 1486 aa11.97□□□□□ -0.49
GDNF-208ENST00000620847 IGF1RP08069 1367 aa11.97□□□□□ -0.49
GDNF-208ENST00000620847 DHX57Q6P158 1386 aaKnown RBP11.97□□□□□ -0.49
GDNF-208ENST00000620847 FGD5Q6ZNL6 1462 aa11.94□□□□□ -0.5
GDNF-208ENST00000620847 MAP3K1Q13233 1512 aa11.93□□□□□ -0.5
GDNF-208ENST00000620847 CC2D2AQ9P2K1 1620 aa11.92□□□□□ -0.5
GDNF-208ENST00000620847 MIER1Q8N108 512 aa11.91□□□□□ -0.5
GDNF-208ENST00000620847 CCNB3Q8WWL7 1395 aa11.91□□□□□ -0.5
GDNF-208ENST00000620847 TIAM1Q13009 1591 aa11.91□□□□□ -0.5
GDNF-208ENST00000620847 CARMIL1Q5VZK9 1371 aa11.9□□□□□ -0.5
GDNF-208ENST00000620847 YTHDC1Q96MU7 727 aaKnown RBP11.87□□□□□ -0.51
GDNF-208ENST00000620847 FANCD2Q9BXW9 1451 aa11.87□□□□□ -0.51
GDNF-208ENST00000620847 DNMBPQ6XZF7 1577 aa11.86□□□□□ -0.51
GDNF-208ENST00000620847 CFAP43Q8NDM7 1665 aa11.86□□□□□ -0.51
GDNF-208ENST00000620847 LRRC9Q6ZRR7 1453 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms