Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
AMBRA1Q9C0C7 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
AMBRA1Q9C0C7 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
AMBRA1Q9C0C7 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
AMBRA1Q9C0C7 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 AC092437.1-201ENST00000624794 1048 ntBASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.65■□□□□ 0.58
AMBRA1Q9C0C7 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
AMBRA1Q9C0C7 BX119927.1-201ENST00000636596 1552 ntBASIC18.64■□□□□ 0.58
AMBRA1Q9C0C7 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 SLC7A5P1-201ENST00000568957 537 ntBASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
AMBRA1Q9C0C7 TMEM179-206ENST00000616017 1645 ntBASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 TREX1-205ENST00000625293 1783 ntBASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 AC006015.1-201ENST00000429970 570 ntBASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.63■□□□□ 0.57
AMBRA1Q9C0C7 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms