Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 CR769767.2-201ENST00000622735 460 ntBASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 AL121956.5-201ENST00000625261 221 ntBASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC17.1■□□□□ 0.33
CSMD1Q96PZ7 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 TSPY21P-201ENST00000433481 731 ntBASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 TSPY23P-201ENST00000440136 739 ntBASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 LINC01238-205ENST00000567549 1107 ntBASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 KRT16P1-201ENST00000399124 1418 ntBASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CSMD1Q96PZ7 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CSMD1Q96PZ7 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CSMD1Q96PZ7 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CSMD1Q96PZ7 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CSMD1Q96PZ7 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.08■□□□□ 0.33
CSMD1Q96PZ7 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.08■□□□□ 0.33
CSMD1Q96PZ7 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CSMD1Q96PZ7 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.08■□□□□ 0.33
CSMD1Q96PZ7 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.08■□□□□ 0.33
CSMD1Q96PZ7 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 KRT17P6-201ENST00000453795 1220 ntBASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 AL671277.2-201ENST00000458060 996 ntBASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 AL138966.2-201ENST00000621997 464 ntBASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.08■□□□□ 0.32
CSMD1Q96PZ7 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 AP005242.2-201ENST00000580065 1175 ntBASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD1Q96PZ7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms