Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 KRT18P11-201ENST00000435214 1283 ntBASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 AC016405.3-201ENST00000607710 860 ntBASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLIP4Q8N3C7 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 MFSD11-216ENST00000590393 1141 ntBASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 TCF3P1-201ENST00000423021 1937 ntBASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 DPP3P2-201ENST00000416030 1696 ntBASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLIP4Q8N3C7 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.65■□□□□ 0.58
CLIP4Q8N3C7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.64■□□□□ 0.58
CLIP4Q8N3C7 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CLIP4Q8N3C7 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CLIP4Q8N3C7 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 AC011767.1-201ENST00000617410 1153 ntBASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 AC013268.1-206ENST00000638368 961 ntBASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 AC112229.1-201ENST00000639295 961 ntBASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLIP4Q8N3C7 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms