Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
DEPDC4Q8N2C3 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
DEPDC4Q8N2C3 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.52■□□□□ 0.55
DEPDC4Q8N2C3 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
DEPDC4Q8N2C3 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
DEPDC4Q8N2C3 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
DEPDC4Q8N2C3 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
DEPDC4Q8N2C3 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 AP000974.1-201ENST00000623909 2387 ntBASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 AC090192.1-201ENST00000517740 490 ntBASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 AC053503.5-201ENST00000601508 636 ntBASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 AC092437.1-201ENST00000624794 1048 ntBASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
DEPDC4Q8N2C3 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 TMEM179-206ENST00000616017 1645 ntBASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 TNXA-203ENST00000507684 2038 ntBASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.5■□□□□ 0.55
DEPDC4Q8N2C3 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 BID-214ENST00000617586 542 ntTSL 5 BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
DEPDC4Q8N2C3 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms