Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.55■□□□□ 0.56
BEST3Q8N1M1 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
BEST3Q8N1M1 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.55■□□□□ 0.56
BEST3Q8N1M1 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
BEST3Q8N1M1 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
BEST3Q8N1M1 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 AL596275.1-201ENST00000423464 877 ntBASIC18.54■□□□□ 0.56
BEST3Q8N1M1 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 AL023875.1-201ENST00000640777 796 ntBASIC18.54■□□□□ 0.56
BEST3Q8N1M1 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.54■□□□□ 0.56
BEST3Q8N1M1 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 AC239809.2-201ENST00000415381 517 ntBASIC18.53■□□□□ 0.56
BEST3Q8N1M1 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 AC023632.3-201ENST00000521633 145 ntBASIC18.53■□□□□ 0.56
BEST3Q8N1M1 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 AC092667.1-201ENST00000434301 2586 ntBASIC18.53■□□□□ 0.56
BEST3Q8N1M1 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
BEST3Q8N1M1 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.52■□□□□ 0.56
BEST3Q8N1M1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.52■□□□□ 0.55
BEST3Q8N1M1 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
BEST3Q8N1M1 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.52■□□□□ 0.55
BEST3Q8N1M1 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
BEST3Q8N1M1 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.52■□□□□ 0.55
BEST3Q8N1M1 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 MIR718-201ENST00000390190 70 ntBASIC18.51■□□□□ 0.55
BEST3Q8N1M1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 AC124016.1-201ENST00000609552 612 ntBASIC18.51■□□□□ 0.55
BEST3Q8N1M1 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
BEST3Q8N1M1 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms