Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 NFIC-211ENST00000641145 8399 ntBASIC12.54□□□□□ -0.4
LINC00643Q86TS7 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC12.54□□□□□ -0.4
LINC00643Q86TS7 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 CEP83-AS1-201ENST00000623122 2482 ntBASIC12.53□□□□□ -0.4
LINC00643Q86TS7 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 PFN2-211ENST00000489155 636 ntTSL 4 BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 CHML-205ENST00000638160 705 ntTSL 3 BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 AL513477.1-201ENST00000602865 2407 ntBASIC12.53□□□□□ -0.4
LINC00643Q86TS7 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
LINC00643Q86TS7 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 BICD1-207ENST00000551848 1962 ntBASIC12.52□□□□□ -0.4
LINC00643Q86TS7 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC12.52□□□□□ -0.4
LINC00643Q86TS7 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 FP700111.2-201ENST00000619190 1892 ntBASIC12.52□□□□□ -0.41
LINC00643Q86TS7 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
LINC00643Q86TS7 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
LINC00643Q86TS7 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms