Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 snR45snR45 172 nt1.84□□□□□ -2.11
UBP3Q01477 ASE1YOR058C 2658 nt1.84□□□□□ -2.11
UBP3Q01477 YDL073WYDL073W 2955 nt1.83□□□□□ -2.12
UBP3Q01477 SWI4YER111C 3282 nt1.83□□□□□ -2.12 RIP-Chip
UBP3Q01477 YDR210WYDR210W 228 nt1.83□□□□□ -2.12
UBP3Q01477 EST2YLR318W 2655 nt1.83□□□□□ -2.12
UBP3Q01477 MSN5YDR335W 3675 nt1.82□□□□□ -2.12
UBP3Q01477 tM(CAU)Q2tM(CAU)Q2 78 nt1.82□□□□□ -2.12
UBP3Q01477 snR14snR14 160 nt1.82□□□□□ -2.12
UBP3Q01477 CFT1YDR301W 4074 nt1.81□□□□□ -2.12
UBP3Q01477 TRM732YMR259C 4263 nt1.81□□□□□ -2.12
UBP3Q01477 NOP9YJL010C 2001 nt1.81□□□□□ -2.12
UBP3Q01477 BIR1YJR089W 2865 nt1.79□□□□□ -2.12
UBP3Q01477 YAL037C-AYAL037C-A 93 nt1.79□□□□□ -2.12
UBP3Q01477 SXM1YDR395W 2835 nt1.79□□□□□ -2.12 RIP-Chip
UBP3Q01477 CDC25YLR310C 4770 nt1.79□□□□□ -2.12
UBP3Q01477 AZF1YOR113W 2745 nt1.78□□□□□ -2.12
UBP3Q01477 SEC3YER008C 4011 nt1.78□□□□□ -2.12
UBP3Q01477 NUP145YGL092W 3954 nt1.78□□□□□ -2.12
UBP3Q01477 FYV10YIL097W 1551 nt1.77□□□□□ -2.13
UBP3Q01477 YLR232WYLR232W 348 nt1.77□□□□□ -2.13
UBP3Q01477 SEC21YNL287W 2808 nt1.76□□□□□ -2.13
UBP3Q01477 NUP192YJL039C 5052 nt1.76□□□□□ -2.13
UBP3Q01477 SET3YKR029C 2256 nt1.76□□□□□ -2.13
UBP3Q01477 SEC1YDR164C 2175 nt1.76□□□□□ -2.13
UBP3Q01477 YGR146C-AYGR146C-A 162 nt1.75□□□□□ -2.13
UBP3Q01477 MEC1YBR136W 7107 nt1.74□□□□□ -2.13
UBP3Q01477 BPH1YCR032W 6504 nt1.74□□□□□ -2.13
UBP3Q01477 APL3YBL037W 3078 nt1.74□□□□□ -2.13 RIP-Chip
UBP3Q01477 YBR072C-AYBR072C-A 162 nt1.74□□□□□ -2.13
UBP3Q01477 snR190snR190 190 nt1.74□□□□□ -2.13
UBP3Q01477 FIG2YCR089W 4830 nt1.74□□□□□ -2.13
UBP3Q01477 VPS15YBR097W 4365 nt1.73□□□□□ -2.13 RIP-Chip
UBP3Q01477 CHS1YNL192W 3396 nt1.73□□□□□ -2.13 RIP-Chip
UBP3Q01477 YJL127W-AYJL127W-A 117 nt1.73□□□□□ -2.13
UBP3Q01477 YNL266WYNL266W 420 nt1.73□□□□□ -2.13
UBP3Q01477 STO1YMR125W 2586 nt1.72□□□□□ -2.13
UBP3Q01477 snR62snR62 100 nt1.71□□□□□ -2.14
UBP3Q01477 RPL26BYGR034W 384 nt1.71□□□□□ -2.14 RIP-Chip
UBP3Q01477 WAR1YML076C 2835 nt1.7□□□□□ -2.14
UBP3Q01477 SPC110YDR356W 2835 nt1.69□□□□□ -2.14
UBP3Q01477 IRA1YBR140C 9279 nt1.68□□□□□ -2.14
UBP3Q01477 NUP188YML103C 4968 nt1.68□□□□□ -2.14
UBP3Q01477 ANS1YHR126C 480 nt1.68□□□□□ -2.14
UBP3Q01477 YBR200W-AYBR200W-A 165 nt1.68□□□□□ -2.14
UBP3Q01477 PMD1YER132C 5262 nt1.67□□□□□ -2.14
UBP3Q01477 YPL060C-AYPL060C-A 3315 nt1.67□□□□□ -2.14
UBP3Q01477 SMC1YFL008W 3678 nt1.65□□□□□ -2.14
UBP3Q01477 MSH3YCR092C 3057 nt1.65□□□□□ -2.14
UBP3Q01477 PRP16YKR086W 3216 nt1.65□□□□□ -2.14
UBP3Q01477 BRR2YER172C 6492 nt1.65□□□□□ -2.15
UBP3Q01477 CAT8YMR280C 4302 nt1.63□□□□□ -2.15
UBP3Q01477 YBL071C-BYBL071C-B 99 nt1.63□□□□□ -2.15
UBP3Q01477 CDC39YCR093W 6327 nt1.6□□□□□ -2.15 RIP-Chip
UBP3Q01477 YOL083C-AYOL083C-A 141 nt1.6□□□□□ -2.15
UBP3Q01477 RPS26AYGL189C 360 nt1.58□□□□□ -2.16 RIP-Chip
UBP3Q01477 NNF2YGR089W 2811 nt1.58□□□□□ -2.16 RIP-Chip
UBP3Q01477 SEC8YPR055W 3198 nt1.58□□□□□ -2.16 RIP-Chip
UBP3Q01477 PET127YOR017W 2403 nt1.57□□□□□ -2.16 RIP-Chip
UBP3Q01477 FYV8YGR196C 2454 nt1.57□□□□□ -2.16 RIP-Chip
UBP3Q01477 GEA2YEL022W 4380 nt1.54□□□□□ -2.16
UBP3Q01477 UBP3YER151C 2739 nt1.54□□□□□ -2.16 RIP-Chip
UBP3Q01477 YLR399W-AYLR399W-A 105 nt1.54□□□□□ -2.16
UBP3Q01477 HKR1YDR420W 5409 nt1.53□□□□□ -2.16
UBP3Q01477 tN(GUU)QtN(GUU)Q 71 nt1.53□□□□□ -2.16
UBP3Q01477 tQ(UUG)E2tQ(UUG)E2 72 nt1.53□□□□□ -2.16
UBP3Q01477 SSK2YNR031C 4740 nt1.53□□□□□ -2.16 RIP-Chip
UBP3Q01477 YPR160W-AYPR160W-A 81 nt1.53□□□□□ -2.16
UBP3Q01477 YBR196C-AYBR196C-A 150 nt1.52□□□□□ -2.17
UBP3Q01477 PIK1YNL267W 3201 nt1.52□□□□□ -2.17
UBP3Q01477 CCH1YGR217W 6120 nt1.51□□□□□ -2.17
UBP3Q01477 SEC10YLR166C 2616 nt1.51□□□□□ -2.17 RIP-Chip
UBP3Q01477 YOL164W-AYOL164W-A 183 nt1.49□□□□□ -2.17
UBP3Q01477 ULP2YIL031W 3105 nt1.49□□□□□ -2.17
UBP3Q01477 YSP1YHR155W 3687 nt1.49□□□□□ -2.17
UBP3Q01477 YDR034C-AYDR034C-A 177 nt1.48□□□□□ -2.17
UBP3Q01477 YLR286W-AYLR286W-A 135 nt1.46□□□□□ -2.18
UBP3Q01477 LAA1YJL207C 6045 nt1.45□□□□□ -2.18
UBP3Q01477 GLG1YKR058W 1851 nt1.44□□□□□ -2.18
UBP3Q01477 NST1YNL091W 3723 nt1.44□□□□□ -2.18
UBP3Q01477 YGR240C-AYGR240C-A 201 nt1.43□□□□□ -2.18
UBP3Q01477 YBL100W-CYBL100W-C 120 nt1.42□□□□□ -2.18
UBP3Q01477 BEM3YPL115C 3387 nt1.41□□□□□ -2.18
UBP3Q01477 YGR130CYGR130C 2451 nt1.38□□□□□ -2.19 RIP-Chip
UBP3Q01477 ORC3YLL004W 1851 nt1.38□□□□□ -2.19
UBP3Q01477 tH(GUG)E1tH(GUG)E1 72 nt1.37□□□□□ -2.19
UBP3Q01477 tH(GUG)E2tH(GUG)E2 72 nt1.37□□□□□ -2.19
UBP3Q01477 tH(GUG)G1tH(GUG)G1 72 nt1.37□□□□□ -2.19
UBP3Q01477 tH(GUG)G2tH(GUG)G2 72 nt1.37□□□□□ -2.19
UBP3Q01477 tH(GUG)HtH(GUG)H 72 nt1.37□□□□□ -2.19
UBP3Q01477 tH(GUG)KtH(GUG)K 72 nt1.37□□□□□ -2.19
UBP3Q01477 tH(GUG)MtH(GUG)M 72 nt1.37□□□□□ -2.19
UBP3Q01477 tD(GUC)QtD(GUC)Q 75 nt1.36□□□□□ -2.19
UBP3Q01477 IML1YJR138W 4755 nt1.35□□□□□ -2.19 RIP-Chip
UBP3Q01477 YNL284C-BYNL284C-B 5268 nt1.34□□□□□ -2.19
UBP3Q01477 EST1YLR233C 2100 nt1.33□□□□□ -2.2
UBP3Q01477 snR47snR47 99 nt1.31□□□□□ -2.2
UBP3Q01477 snR69snR69 101 nt1.3□□□□□ -2.2
UBP3Q01477 CSE1YGL238W 2883 nt1.29□□□□□ -2.2
UBP3Q01477 snR53snR53 91 nt1.29□□□□□ -2.2
Retrieved 100 of 7,029 protein–RNA pairs in 14.9 ms