Protein–RNA interactions for Protein: Q00578

SSL2, General transcription and DNA repair factor IIH helicase subunit XPB, yeastyeast

Predictions only

Length 843 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL2Q00578 YCS4YLR272C 3531 nt1.53□□□□□ -2.16
SSL2Q00578 SET3YKR029C 2256 nt1.53□□□□□ -2.16
SSL2Q00578 SSK2YNR031C 4740 nt1.53□□□□□ -2.16
SSL2Q00578 STO1YMR125W 2586 nt1.53□□□□□ -2.17
SSL2Q00578 CHS1YNL192W 3396 nt1.52□□□□□ -2.17
SSL2Q00578 YNL284C-BYNL284C-B 5268 nt1.52□□□□□ -2.17
SSL2Q00578 AZF1YOR113W 2745 nt1.52□□□□□ -2.17
SSL2Q00578 NOP9YJL010C 2001 nt1.51□□□□□ -2.17
SSL2Q00578 ASE1YOR058C 2658 nt1.51□□□□□ -2.17
SSL2Q00578 YLR041WYLR041W 321 nt1.51□□□□□ -2.17
SSL2Q00578 YML002WYML002W 2214 nt1.51□□□□□ -2.17
SSL2Q00578 CDC25YLR310C 4770 nt1.51□□□□□ -2.17
SSL2Q00578 COG6YNL041C 2520 nt1.49□□□□□ -2.17
SSL2Q00578 RCO1YMR075W 2055 nt1.49□□□□□ -2.17
SSL2Q00578 SBH1YER087C-B 249 nt1.49□□□□□ -2.17
SSL2Q00578 ANS1YHR126C 480 nt1.49□□□□□ -2.17
SSL2Q00578 SMC1YFL008W 3678 nt1.49□□□□□ -2.17
SSL2Q00578 EST2YLR318W 2655 nt1.48□□□□□ -2.17
SSL2Q00578 SEC21YNL287W 2808 nt1.48□□□□□ -2.17
SSL2Q00578 STF2YGR008C 255 nt1.48□□□□□ -2.17
SSL2Q00578 FYV10YIL097W 1551 nt1.47□□□□□ -2.17
SSL2Q00578 YDL247W-AYDL247W-A 75 nt1.47□□□□□ -2.17
SSL2Q00578 HKR1YDR420W 5409 nt1.46□□□□□ -2.18
SSL2Q00578 WAR1YML076C 2835 nt1.46□□□□□ -2.18
SSL2Q00578 NUP192YJL039C 5052 nt1.46□□□□□ -2.18
SSL2Q00578 SEC3YER008C 4011 nt1.46□□□□□ -2.18
SSL2Q00578 GEA2YEL022W 4380 nt1.46□□□□□ -2.18
SSL2Q00578 YGL041C-BYGL041C-B 183 nt1.46□□□□□ -2.18
SSL2Q00578 snR190snR190 190 nt1.46□□□□□ -2.18
SSL2Q00578 APL3YBL037W 3078 nt1.46□□□□□ -2.18
SSL2Q00578 BEM2YER155C 6504 nt1.44□□□□□ -2.18
SSL2Q00578 YDR210WYDR210W 228 nt1.44□□□□□ -2.18
SSL2Q00578 SWI4YER111C 3282 nt1.44□□□□□ -2.18
SSL2Q00578 NUP188YML103C 4968 nt1.43□□□□□ -2.18
SSL2Q00578 tM(CAU)Q2tM(CAU)Q2 78 nt1.42□□□□□ -2.18
SSL2Q00578 YLR232WYLR232W 348 nt1.42□□□□□ -2.18
SSL2Q00578 CLU1YMR012W 3834 nt1.42□□□□□ -2.18
SSL2Q00578 RPL26BYGR034W 384 nt1.41□□□□□ -2.18
SSL2Q00578 MSN5YDR335W 3675 nt1.41□□□□□ -2.18
SSL2Q00578 KAP120YPL125W 3099 nt1.39□□□□□ -2.19
SSL2Q00578 CDC39YCR093W 6327 nt1.39□□□□□ -2.19
SSL2Q00578 LAA1YJL207C 6045 nt1.38□□□□□ -2.19
SSL2Q00578 YBR200W-AYBR200W-A 165 nt1.37□□□□□ -2.19
SSL2Q00578 MSH3YCR092C 3057 nt1.36□□□□□ -2.19
SSL2Q00578 RAD9YDR217C 3930 nt1.35□□□□□ -2.19
SSL2Q00578 SEC1YDR164C 2175 nt1.35□□□□□ -2.19
SSL2Q00578 NUP145YGL092W 3954 nt1.35□□□□□ -2.19
SSL2Q00578 YJL127W-AYJL127W-A 117 nt1.35□□□□□ -2.19
SSL2Q00578 tH(GUG)E1tH(GUG)E1 72 nt1.34□□□□□ -2.19
SSL2Q00578 tH(GUG)E2tH(GUG)E2 72 nt1.34□□□□□ -2.19
SSL2Q00578 tH(GUG)G1tH(GUG)G1 72 nt1.34□□□□□ -2.19
SSL2Q00578 tH(GUG)G2tH(GUG)G2 72 nt1.34□□□□□ -2.19
SSL2Q00578 tH(GUG)HtH(GUG)H 72 nt1.34□□□□□ -2.19
SSL2Q00578 tH(GUG)KtH(GUG)K 72 nt1.34□□□□□ -2.19
SSL2Q00578 tH(GUG)MtH(GUG)M 72 nt1.34□□□□□ -2.19
SSL2Q00578 YDL073WYDL073W 2955 nt1.33□□□□□ -2.2
SSL2Q00578 tS(GCU)Q1tS(GCU)Q1 86 nt1.33□□□□□ -2.2
SSL2Q00578 BIR1YJR089W 2865 nt1.33□□□□□ -2.2
SSL2Q00578 snR81snR81 201 nt1.31□□□□□ -2.2
SSL2Q00578 tN(GUU)QtN(GUU)Q 71 nt1.3□□□□□ -2.2
SSL2Q00578 YGR146C-AYGR146C-A 162 nt1.3□□□□□ -2.2
SSL2Q00578 YNL266WYNL266W 420 nt1.3□□□□□ -2.2
SSL2Q00578 SEC8YPR055W 3198 nt1.29□□□□□ -2.2
SSL2Q00578 ROM2YLR371W 4071 nt1.28□□□□□ -2.2
SSL2Q00578 BUD3YCL014W 4911 nt1.27□□□□□ -2.21
SSL2Q00578 YIL142C-AYIL142C-A 333 nt1.27□□□□□ -2.21
SSL2Q00578 YBR072C-AYBR072C-A 162 nt1.27□□□□□ -2.21
SSL2Q00578 YPR160W-AYPR160W-A 81 nt1.27□□□□□ -2.21
SSL2Q00578 PRP16YKR086W 3216 nt1.27□□□□□ -2.21
SSL2Q00578 SCC2YDR180W 4482 nt1.26□□□□□ -2.21
SSL2Q00578 YLR399W-AYLR399W-A 105 nt1.24□□□□□ -2.21
SSL2Q00578 RPM2YML091C 3609 nt1.24□□□□□ -2.21
SSL2Q00578 NST1YNL091W 3723 nt1.24□□□□□ -2.21
SSL2Q00578 YAL037C-AYAL037C-A 93 nt1.23□□□□□ -2.21
SSL2Q00578 NNF2YGR089W 2811 nt1.22□□□□□ -2.21
SSL2Q00578 YLL066W-BYLL066W-B 171 nt1.19□□□□□ -2.22
SSL2Q00578 UBP3YER151C 2739 nt1.19□□□□□ -2.22
SSL2Q00578 BEM3YPL115C 3387 nt1.19□□□□□ -2.22
SSL2Q00578 snR45snR45 172 nt1.18□□□□□ -2.22
SSL2Q00578 YGR130CYGR130C 2451 nt1.17□□□□□ -2.22
SSL2Q00578 YSP1YHR155W 3687 nt1.17□□□□□ -2.22
SSL2Q00578 DOP1YDR141C 5097 nt1.16□□□□□ -2.22
SSL2Q00578 YOL083C-AYOL083C-A 141 nt1.16□□□□□ -2.22
SSL2Q00578 HUG1YML058W-A 207 nt1.15□□□□□ -2.23
SSL2Q00578 YBL071C-BYBL071C-B 99 nt1.15□□□□□ -2.23
SSL2Q00578 SIP4YJL089W 2490 nt1.15□□□□□ -2.23
SSL2Q00578 IML1YJR138W 4755 nt1.14□□□□□ -2.23
SSL2Q00578 VAM6YDL077C 3150 nt1.14□□□□□ -2.23
SSL2Q00578 YBR196C-AYBR196C-A 150 nt1.13□□□□□ -2.23
SSL2Q00578 MYO1YHR023W 5787 nt1.13□□□□□ -2.23
SSL2Q00578 SPT7YBR081C 3999 nt1.12□□□□□ -2.23
SSL2Q00578 GLG1YKR058W 1851 nt1.12□□□□□ -2.23
SSL2Q00578 SEC10YLR166C 2616 nt1.12□□□□□ -2.23
SSL2Q00578 ULP2YIL031W 3105 nt1.12□□□□□ -2.23
SSL2Q00578 snR62snR62 100 nt1.11□□□□□ -2.23
SSL2Q00578 RPS26AYGL189C 360 nt1.11□□□□□ -2.23
SSL2Q00578 YPL060C-AYPL060C-A 3315 nt1.1□□□□□ -2.23
SSL2Q00578 YPR117WYPR117W 7470 nt1.08□□□□□ -2.24
SSL2Q00578 tV(UAC)BtV(UAC)B 74 nt1.07□□□□□ -2.24
SSL2Q00578 tV(UAC)DtV(UAC)D 74 nt1.07□□□□□ -2.24
Retrieved 100 of 7,029 protein–RNA pairs in 13.6 ms