Protein–RNA interactions for Protein: P38319

TDP1, Tyrosyl-DNA phosphodiesterase 1, yeastyeast

Predictions only

Length 544 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TDP1P38319 BRR2YER172C 6492 nt1.55□□□□□ -2.16
TDP1P38319 YLR041WYLR041W 321 nt1.53□□□□□ -2.16
TDP1P38319 snR14snR14 160 nt1.53□□□□□ -2.16
TDP1P38319 KAP120YPL125W 3099 nt1.52□□□□□ -2.17
TDP1P38319 SEC21YNL287W 2808 nt1.52□□□□□ -2.17
TDP1P38319 YDR210WYDR210W 228 nt1.52□□□□□ -2.17
TDP1P38319 CHS1YNL192W 3396 nt1.51□□□□□ -2.17
TDP1P38319 SMC1YFL008W 3678 nt1.51□□□□□ -2.17
TDP1P38319 FYV10YIL097W 1551 nt1.51□□□□□ -2.17
TDP1P38319 TRM732YMR259C 4263 nt1.5□□□□□ -2.17
TDP1P38319 YLR232WYLR232W 348 nt1.5□□□□□ -2.17
TDP1P38319 NOP9YJL010C 2001 nt1.5□□□□□ -2.17
TDP1P38319 YCS4YLR272C 3531 nt1.5□□□□□ -2.17
TDP1P38319 BIR1YJR089W 2865 nt1.49□□□□□ -2.17
TDP1P38319 PET127YOR017W 2403 nt1.49□□□□□ -2.17
TDP1P38319 YJL127W-AYJL127W-A 117 nt1.49□□□□□ -2.17
TDP1P38319 YAL037C-AYAL037C-A 93 nt1.49□□□□□ -2.17
TDP1P38319 SXM1YDR395W 2835 nt1.49□□□□□ -2.17
TDP1P38319 FYV8YGR196C 2454 nt1.48□□□□□ -2.17
TDP1P38319 PIK1YNL267W 3201 nt1.48□□□□□ -2.17
TDP1P38319 CCH1YGR217W 6120 nt1.48□□□□□ -2.17
TDP1P38319 YLR422WYLR422W 5799 nt1.48□□□□□ -2.17
TDP1P38319 SSK2YNR031C 4740 nt1.47□□□□□ -2.17
TDP1P38319 tQ(UUG)E2tQ(UUG)E2 72 nt1.47□□□□□ -2.17
TDP1P38319 YNL266WYNL266W 420 nt1.47□□□□□ -2.17
TDP1P38319 NUP192YJL039C 5052 nt1.46□□□□□ -2.18
TDP1P38319 YBR072C-AYBR072C-A 162 nt1.46□□□□□ -2.18
TDP1P38319 snR190snR190 190 nt1.46□□□□□ -2.18
TDP1P38319 STO1YMR125W 2586 nt1.46□□□□□ -2.18
TDP1P38319 SEC1YDR164C 2175 nt1.45□□□□□ -2.18
TDP1P38319 EST2YLR318W 2655 nt1.45□□□□□ -2.18
TDP1P38319 SET3YKR029C 2256 nt1.45□□□□□ -2.18
TDP1P38319 RAD9YDR217C 3930 nt1.44□□□□□ -2.18
TDP1P38319 YGR146C-AYGR146C-A 162 nt1.44□□□□□ -2.18
TDP1P38319 SPC110YDR356W 2835 nt1.44□□□□□ -2.18
TDP1P38319 NUP188YML103C 4968 nt1.44□□□□□ -2.18
TDP1P38319 ASE1YOR058C 2658 nt1.43□□□□□ -2.18
TDP1P38319 AZF1YOR113W 2745 nt1.43□□□□□ -2.18
TDP1P38319 snR62snR62 100 nt1.43□□□□□ -2.18
TDP1P38319 RPL26BYGR034W 384 nt1.43□□□□□ -2.18
TDP1P38319 SWI4YER111C 3282 nt1.43□□□□□ -2.18
TDP1P38319 FIG2YCR089W 4830 nt1.42□□□□□ -2.18
TDP1P38319 WAR1YML076C 2835 nt1.42□□□□□ -2.18
TDP1P38319 RPM2YML091C 3609 nt1.41□□□□□ -2.18
TDP1P38319 SAC3YDR159W 3906 nt1.41□□□□□ -2.18
TDP1P38319 ROM2YLR371W 4071 nt1.41□□□□□ -2.18
TDP1P38319 CAT8YMR280C 4302 nt1.39□□□□□ -2.19
TDP1P38319 YOL083C-AYOL083C-A 141 nt1.39□□□□□ -2.19
TDP1P38319 APL3YBL037W 3078 nt1.39□□□□□ -2.19
TDP1P38319 GEA2YEL022W 4380 nt1.39□□□□□ -2.19
TDP1P38319 YDL073WYDL073W 2955 nt1.38□□□□□ -2.19
TDP1P38319 HKR1YDR420W 5409 nt1.37□□□□□ -2.19
TDP1P38319 SEC3YER008C 4011 nt1.37□□□□□ -2.19
TDP1P38319 MSN5YDR335W 3675 nt1.37□□□□□ -2.19
TDP1P38319 YBL071C-BYBL071C-B 99 nt1.36□□□□□ -2.19
TDP1P38319 NUP145YGL092W 3954 nt1.34□□□□□ -2.19
TDP1P38319 CDC25YLR310C 4770 nt1.33□□□□□ -2.2
TDP1P38319 YBR200W-AYBR200W-A 165 nt1.32□□□□□ -2.2
TDP1P38319 MSH3YCR092C 3057 nt1.31□□□□□ -2.2
TDP1P38319 YBR196C-AYBR196C-A 150 nt1.31□□□□□ -2.2
TDP1P38319 SEC8YPR055W 3198 nt1.31□□□□□ -2.2
TDP1P38319 RPS26AYGL189C 360 nt1.3□□□□□ -2.2
TDP1P38319 CDC39YCR093W 6327 nt1.29□□□□□ -2.2
TDP1P38319 tN(GUU)QtN(GUU)Q 71 nt1.28□□□□□ -2.2
TDP1P38319 NNF2YGR089W 2811 nt1.27□□□□□ -2.21
TDP1P38319 YDR034C-AYDR034C-A 177 nt1.27□□□□□ -2.21
TDP1P38319 BEM3YPL115C 3387 nt1.27□□□□□ -2.21
TDP1P38319 PRP16YKR086W 3216 nt1.27□□□□□ -2.21
TDP1P38319 SEC10YLR166C 2616 nt1.26□□□□□ -2.21
TDP1P38319 YLR399W-AYLR399W-A 105 nt1.26□□□□□ -2.21
TDP1P38319 YOL164W-AYOL164W-A 183 nt1.26□□□□□ -2.21
TDP1P38319 YPR160W-AYPR160W-A 81 nt1.26□□□□□ -2.21
TDP1P38319 UBP3YER151C 2739 nt1.25□□□□□ -2.21
TDP1P38319 YBL100W-CYBL100W-C 120 nt1.24□□□□□ -2.21
TDP1P38319 LAA1YJL207C 6045 nt1.23□□□□□ -2.21
TDP1P38319 YSP1YHR155W 3687 nt1.22□□□□□ -2.21
TDP1P38319 YNL284C-BYNL284C-B 5268 nt1.22□□□□□ -2.21
TDP1P38319 YGR240C-AYGR240C-A 201 nt1.22□□□□□ -2.21
TDP1P38319 CLU1YMR012W 3834 nt1.21□□□□□ -2.22
TDP1P38319 YGR130CYGR130C 2451 nt1.21□□□□□ -2.22
TDP1P38319 YLR286W-AYLR286W-A 135 nt1.2□□□□□ -2.22
TDP1P38319 ULP2YIL031W 3105 nt1.2□□□□□ -2.22
TDP1P38319 GLG1YKR058W 1851 nt1.2□□□□□ -2.22
TDP1P38319 tH(GUG)E1tH(GUG)E1 72 nt1.19□□□□□ -2.22
TDP1P38319 tH(GUG)E2tH(GUG)E2 72 nt1.19□□□□□ -2.22
TDP1P38319 tH(GUG)G1tH(GUG)G1 72 nt1.19□□□□□ -2.22
TDP1P38319 tH(GUG)G2tH(GUG)G2 72 nt1.19□□□□□ -2.22
TDP1P38319 tH(GUG)HtH(GUG)H 72 nt1.19□□□□□ -2.22
TDP1P38319 tH(GUG)KtH(GUG)K 72 nt1.19□□□□□ -2.22
TDP1P38319 tH(GUG)MtH(GUG)M 72 nt1.19□□□□□ -2.22
TDP1P38319 HUG1YML058W-A 207 nt1.17□□□□□ -2.22
TDP1P38319 tD(GUC)QtD(GUC)Q 75 nt1.15□□□□□ -2.23
TDP1P38319 snR47snR47 99 nt1.15□□□□□ -2.23
TDP1P38319 IML1YJR138W 4755 nt1.15□□□□□ -2.23
TDP1P38319 ORC3YLL004W 1851 nt1.14□□□□□ -2.23
TDP1P38319 YPL060C-AYPL060C-A 3315 nt1.13□□□□□ -2.23
TDP1P38319 EST1YLR233C 2100 nt1.12□□□□□ -2.23
TDP1P38319 YJR029WYJR029W 5268 nt1.1□□□□□ -2.23
TDP1P38319 YPR137C-BYPR137C-B 5268 nt1.1□□□□□ -2.23
TDP1P38319 snR69snR69 101 nt1.09□□□□□ -2.23
Retrieved 100 of 7,029 protein–RNA pairs in 12.6 ms