Protein–RNA interactions for Protein: P0CX60

TY1A-PR2, Transposon Ty1-PR2 Gag polyprotein, yeastyeast

Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1A-PR2P0CX60 YOR055WYOR055W 435 nt2.19□□□□□ -2.06
TY1A-PR2P0CX60 CDC25YLR310C 4770 nt2.19□□□□□ -2.06
TY1A-PR2P0CX60 DNF1YER166W 4716 nt2.17□□□□□ -2.06
TY1A-PR2P0CX60 YGR122C-AYGR122C-A 129 nt2.17□□□□□ -2.06
TY1A-PR2P0CX60 INO80YGL150C 4470 nt2.17□□□□□ -2.06
TY1A-PR2P0CX60 SIR4YDR227W 4077 nt2.17□□□□□ -2.06
TY1A-PR2P0CX60 YSP1YHR155W 3687 nt2.16□□□□□ -2.06
TY1A-PR2P0CX60 IRA2YOL081W 9240 nt2.16□□□□□ -2.06
TY1A-PR2P0CX60 YML054C-AYML054C-A 159 nt2.16□□□□□ -2.06
TY1A-PR2P0CX60 UTP22YGR090W 3714 nt2.16□□□□□ -2.06
TY1A-PR2P0CX60 ULP2YIL031W 3105 nt2.16□□□□□ -2.06
TY1A-PR2P0CX60 CSF1YLR087C 8877 nt2.16□□□□□ -2.06
TY1A-PR2P0CX60 PET127YOR017W 2403 nt2.15□□□□□ -2.07
TY1A-PR2P0CX60 snR69snR69 101 nt2.15□□□□□ -2.07
TY1A-PR2P0CX60 RDS3YPR094W 324 nt2.15□□□□□ -2.07
TY1A-PR2P0CX60 KAP122YGL016W 3246 nt2.14□□□□□ -2.07
TY1A-PR2P0CX60 BCK1YJL095W 4437 nt2.13□□□□□ -2.07
TY1A-PR2P0CX60 PAU10YDR542W 363 nt2.12□□□□□ -2.07
TY1A-PR2P0CX60 YLR399W-AYLR399W-A 105 nt2.12□□□□□ -2.07
TY1A-PR2P0CX60 PAU4YLR461W 363 nt2.12□□□□□ -2.07
TY1A-PR2P0CX60 SAC3YDR159W 3906 nt2.11□□□□□ -2.07
TY1A-PR2P0CX60 MSN5YDR335W 3675 nt2.11□□□□□ -2.07
TY1A-PR2P0CX60 AI1Q0050 2505 nt2.1□□□□□ -2.07
TY1A-PR2P0CX60 tC(GCA)BtC(GCA)B 72 nt2.1□□□□□ -2.07
TY1A-PR2P0CX60 tC(GCA)GtC(GCA)G 72 nt2.1□□□□□ -2.07
TY1A-PR2P0CX60 tC(GCA)P1tC(GCA)P1 72 nt2.1□□□□□ -2.07
TY1A-PR2P0CX60 tC(GCA)P2tC(GCA)P2 72 nt2.1□□□□□ -2.07
TY1A-PR2P0CX60 snR38snR38 95 nt2.1□□□□□ -2.07
TY1A-PR2P0CX60 DNA2YHR164C 4569 nt2.09□□□□□ -2.07
TY1A-PR2P0CX60 tN(GUU)QtN(GUU)Q 71 nt2.09□□□□□ -2.07
TY1A-PR2P0CX60 CSE1YGL238W 2883 nt2.09□□□□□ -2.08
TY1A-PR2P0CX60 YCS4YLR272C 3531 nt2.09□□□□□ -2.08
TY1A-PR2P0CX60 TFC3YAL001C 3483 nt2.08□□□□□ -2.08
TY1A-PR2P0CX60 UBR2YLR024C 5619 nt2.08□□□□□ -2.08
TY1A-PR2P0CX60 SKI3YPR189W 4299 nt2.07□□□□□ -2.08
TY1A-PR2P0CX60 HUG1YML058W-A 207 nt2.07□□□□□ -2.08
TY1A-PR2P0CX60 BPH1YCR032W 6504 nt2.06□□□□□ -2.08
TY1A-PR2P0CX60 NIP1YMR309C 2439 nt2.06□□□□□ -2.08
TY1A-PR2P0CX60 PKH3YDR466W 2697 nt2.05□□□□□ -2.08
TY1A-PR2P0CX60 BNI1YNL271C 5862 nt2.05□□□□□ -2.08
TY1A-PR2P0CX60 PDR1YGL013C 3207 nt2.04□□□□□ -2.08
TY1A-PR2P0CX60 YOL098CYOL098C 3114 nt2.04□□□□□ -2.08
TY1A-PR2P0CX60 SEC3YER008C 4011 nt2.03□□□□□ -2.08
TY1A-PR2P0CX60 UBP2YOR124C 3819 nt2.03□□□□□ -2.08
TY1A-PR2P0CX60 SCD5YOR329C 2619 nt2.01□□□□□ -2.09
TY1A-PR2P0CX60 tF(GAA)DtF(GAA)D 73 nt2.01□□□□□ -2.09
TY1A-PR2P0CX60 tF(GAA)NtF(GAA)N 73 nt2.01□□□□□ -2.09
TY1A-PR2P0CX60 YJL077W-AYJL077W-A 87 nt2.01□□□□□ -2.09
TY1A-PR2P0CX60 VPS13YLL040C 9435 nt2□□□□□ -2.09
TY1A-PR2P0CX60 YHR180W-AYHR180W-A 183 nt1.99□□□□□ -2.09
TY1A-PR2P0CX60 MSH3YCR092C 3057 nt1.99□□□□□ -2.09
TY1A-PR2P0CX60 SPP41YDR464W 4308 nt1.98□□□□□ -2.09
TY1A-PR2P0CX60 SGS1YMR190C 4344 nt1.98□□□□□ -2.09
TY1A-PR2P0CX60 KCS1YDR017C 3153 nt1.98□□□□□ -2.09
TY1A-PR2P0CX60 SEC16YPL085W 6588 nt1.98□□□□□ -2.09
TY1A-PR2P0CX60 NUP145YGL092W 3954 nt1.98□□□□□ -2.09
TY1A-PR2P0CX60 IRC20YLR247C 4671 nt1.97□□□□□ -2.09
TY1A-PR2P0CX60 CAT8YMR280C 4302 nt1.97□□□□□ -2.09
TY1A-PR2P0CX60 ATG9YDL149W 2994 nt1.97□□□□□ -2.09
TY1A-PR2P0CX60 SEC31YDL195W 3822 nt1.97□□□□□ -2.09
TY1A-PR2P0CX60 SIP4YJL089W 2490 nt1.97□□□□□ -2.09
TY1A-PR2P0CX60 PDR11YIL013C 4236 nt1.97□□□□□ -2.09
TY1A-PR2P0CX60 SWI4YER111C 3282 nt1.97□□□□□ -2.09
TY1A-PR2P0CX60 YLR419WYLR419W 4308 nt1.95□□□□□ -2.1
TY1A-PR2P0CX60 DGR1YNL130C-A 147 nt1.95□□□□□ -2.1
TY1A-PR2P0CX60 MSB1YOR188W 3414 nt1.94□□□□□ -2.1
TY1A-PR2P0CX60 USO1YDL058W 5373 nt1.94□□□□□ -2.1
TY1A-PR2P0CX60 PAU12YGR294W 363 nt1.93□□□□□ -2.1
TY1A-PR2P0CX60 FYV8YGR196C 2454 nt1.93□□□□□ -2.1
TY1A-PR2P0CX60 NST1YNL091W 3723 nt1.92□□□□□ -2.1
TY1A-PR2P0CX60 tQ(UUG)QtQ(UUG)Q 76 nt1.92□□□□□ -2.1
TY1A-PR2P0CX60 BUL2YML111W 2763 nt1.91□□□□□ -2.1
TY1A-PR2P0CX60 PET111YMR257C 2403 nt1.89□□□□□ -2.11
TY1A-PR2P0CX60 MBB1YJL199C 327 nt1.89□□□□□ -2.11
TY1A-PR2P0CX60 YLL006W-AYLL006W-A 177 nt1.87□□□□□ -2.11
TY1A-PR2P0CX60 TOR2YKL203C 7425 nt1.85□□□□□ -2.11
TY1A-PR2P0CX60 REV3YPL167C 4515 nt1.85□□□□□ -2.11
TY1A-PR2P0CX60 EST2YLR318W 2655 nt1.84□□□□□ -2.11
TY1A-PR2P0CX60 YMR045CYMR045C 5268 nt1.84□□□□□ -2.12
TY1A-PR2P0CX60 snR70snR70 164 nt1.82□□□□□ -2.12
TY1A-PR2P0CX60 TMA7YLR262C-A 195 nt1.82□□□□□ -2.12
TY1A-PR2P0CX60 MON2YNL297C 4911 nt1.8□□□□□ -2.12
TY1A-PR2P0CX60 YHR214C-BYHR214C-B 5382 nt1.8□□□□□ -2.12
TY1A-PR2P0CX60 NEO1YIL048W 3456 nt1.79□□□□□ -2.12
TY1A-PR2P0CX60 BST1YFL025C 3090 nt1.79□□□□□ -2.12
TY1A-PR2P0CX60 NUP188YML103C 4968 nt1.78□□□□□ -2.12
TY1A-PR2P0CX60 FKS3YMR306W 5358 nt1.78□□□□□ -2.12
TY1A-PR2P0CX60 tW(CCA)G1tW(CCA)G1 72 nt1.77□□□□□ -2.13
TY1A-PR2P0CX60 tW(CCA)G2tW(CCA)G2 72 nt1.77□□□□□ -2.13
TY1A-PR2P0CX60 tW(CCA)JtW(CCA)J 72 nt1.77□□□□□ -2.13
TY1A-PR2P0CX60 tW(CCA)KtW(CCA)K 72 nt1.77□□□□□ -2.13
TY1A-PR2P0CX60 tW(CCA)MtW(CCA)M 72 nt1.77□□□□□ -2.13
TY1A-PR2P0CX60 tW(CCA)PtW(CCA)P 72 nt1.77□□□□□ -2.13
TY1A-PR2P0CX60 YPL060C-AYPL060C-A 3315 nt1.77□□□□□ -2.13
TY1A-PR2P0CX60 PMD1YER132C 5262 nt1.76□□□□□ -2.13
TY1A-PR2P0CX60 CLU1YMR012W 3834 nt1.76□□□□□ -2.13
TY1A-PR2P0CX60 YER090C-AYER090C-A 90 nt1.74□□□□□ -2.13
TY1A-PR2P0CX60 FKS1YLR342W 5631 nt1.73□□□□□ -2.13
TY1A-PR2P0CX60 YMR247W-AYMR247W-A 144 nt1.72□□□□□ -2.13
TY1A-PR2P0CX60 MLP2YIL149C 5040 nt1.67□□□□□ -2.14
Retrieved 100 of 7,029 protein–RNA pairs in 9.2 ms