Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.1■□□□□ 0.019e-21■■□□□ 14
SMNDC1O75940 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.034e-8■■□□□ 14
SMNDC1O75940 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.76□□□□□ -0.054e-8■■□□□ 14
SMNDC1O75940 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.72□□□□□ -0.054e-8■■□□□ 14
SMNDC1O75940 TTC38-205ENST00000451998 582 ntTSL 214.26□□□□□ -0.134e-8■■□□□ 14
SMNDC1O75940 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.144e-8■■□□□ 14
SMNDC1O75940 CCNL2-218ENST00000496007 4452 ntTSL 214.04□□□□□ -0.169e-21■■□□□ 14
SMNDC1O75940 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC13.66□□□□□ -0.224e-8■■□□□ 14
SMNDC1O75940 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.294e-8■■□□□ 14
SMNDC1O75940 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC12.21□□□□□ -0.454e-8■■□□□ 14
SMNDC1O75940 RBM14-205ENST00000443702 732 ntTSL 3 BASIC11.81□□□□□ -0.524e-8■■□□□ 14
SMNDC1O75940 CCNL2-209ENST00000471930 846 ntTSL 511.55□□□□□ -0.569e-21■■□□□ 14
SMNDC1O75940 CCNL2-210ENST00000473872 557 ntTSL 211.46□□□□□ -0.574e-8■■□□□ 14
SMNDC1O75940 AFDN-207ENST00000400822 7593 ntTSL 5 BASIC11.21□□□□□ -0.624e-8■■□□□ 14
SMNDC1O75940 RBM14-RBM4-204ENST00000511114 523 ntTSL 410.95□□□□□ -0.664e-8■■□□□ 14
SMNDC1O75940 RBM14-203ENST00000409372 876 ntTSL 2 BASIC10.94□□□□□ -0.664e-8■■□□□ 14
SMNDC1O75940 CLASP1-201ENST00000263710 8092 ntTSL 5 BASIC10.41□□□□□ -0.744e-8■■□□□ 14
SMNDC1O75940 AFDN-221ENST00000511637 5999 ntTSL 1 (best)10.41□□□□□ -0.744e-8■■□□□ 14
SMNDC1O75940 AFDN-204ENST00000366809 4839 ntTSL 1 (best)10□□□□□ -0.814e-8■■□□□ 14
SMNDC1O75940 RPL10-209ENST00000451365 713 ntTSL 1 (best)9.4□□□□□ -0.92e-10■■□□□ 14
SMNDC1O75940 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC9.18□□□□□ -0.944e-8■■□□□ 14
SMNDC1O75940 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC9.11□□□□□ -0.954e-8■■□□□ 14
SMNDC1O75940 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC8.91□□□□□ -0.984e-8■■□□□ 14
SMNDC1O75940 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC8.65□□□□□ -1.034e-8■■□□□ 14
SMNDC1O75940 A2M-205ENST00000472360 692 ntTSL 27.85□□□□□ -1.155e-22■■□□□ 14
SMNDC1O75940 A2M-212ENST00000545828 471 ntTSL 47.83□□□□□ -1.165e-22■■□□□ 14
SMNDC1O75940 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.25e-22■■□□□ 14
SMNDC1O75940 A2M-213ENST00000546069 593 ntTSL 57.45□□□□□ -1.225e-22■■□□□ 14
SMNDC1O75940 CLASP1-211ENST00000474065 516 ntTSL 36.73□□□□□ -1.334e-8■■□□□ 14
SMNDC1O75940 WDR43-206ENST00000466067 628 ntTSL 25.99□□□□□ -1.457e-65■■□□□ 14
SMNDC1O75940 C19orf48-214ENST00000602125 292 ntTSL 55.38□□□□□ -1.553e-17■■□□□ 14
SMNDC1O75940 SLC17A9-203ENST00000411611 565 ntTSL 212.61□□□□□ -0.392e-8■■□□□ 14
SMNDC1O75940 CIRBP-205ENST00000585913 833 ntTSL 319.5■□□□□ 0.711e-6■■□□□ 14
SMNDC1O75940 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.661e-6■■□□□ 14
SMNDC1O75940 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.551e-6■■□□□ 14
SMNDC1O75940 CIRBP-212ENST00000587169 3028 ntTSL 217.75■□□□□ 0.431e-6■■□□□ 14
SMNDC1O75940 CIRBP-228ENST00000590347 3117 ntTSL 216.79■□□□□ 0.281e-6■■□□□ 14
SMNDC1O75940 CIRBP-232ENST00000591376 830 ntTSL 316.57■□□□□ 0.241e-6■■□□□ 14
SMNDC1O75940 CIRBP-210ENST00000586636 938 ntTSL 216.57■□□□□ 0.241e-6■■□□□ 14
SMNDC1O75940 CIRBP-237ENST00000592234 571 ntTSL 516.57■□□□□ 0.241e-6■■□□□ 14
SMNDC1O75940 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC15.92■□□□□ 0.141e-6■■□□□ 14
SMNDC1O75940 CIRBP-206ENST00000585914 1052 ntTSL 515.35■□□□□ 0.051e-6■■□□□ 14
SMNDC1O75940 CIRBP-242ENST00000593093 3528 ntTSL 215.23■□□□□ 0.031e-6■■□□□ 14
SMNDC1O75940 SRSF11-213ENST00000481648 389 ntTSL 39.41□□□□□ -0.92e-37■■□□□ 14
SMNDC1O75940 SRSF11-215ENST00000486667 662 ntTSL 59.4□□□□□ -0.92e-37■■□□□ 14
SMNDC1O75940 SNHG12-203ENST00000464115 712 ntTSL 316.3■□□□□ 0.21e-13■■□□□ 14
SMNDC1O75940 SNHG12-202ENST00000461832 675 ntTSL 212.43□□□□□ -0.421e-13■■□□□ 14
SMNDC1O75940 ASPSCR1-210ENST00000581608 2387 ntTSL 221■□□□□ 0.954e-7■■□□□ 13.9
SMNDC1O75940 GRB10-213ENST00000461886 624 ntTSL 28.83□□□□□ -15e-13■■□□□ 13.9
SMNDC1O75940 IGF2R-204ENST00000475834 758 ntTSL 210.64□□□□□ -0.713e-8■■□□□ 13.9
SMNDC1O75940 MSH5-208ENST00000429846 616 ntTSL 313.45□□□□□ -0.262e-12■■□□□ 13.9
SMNDC1O75940 ZNF692-225ENST00000533614 553 ntTSL 420.68■□□□□ 0.91e-7■■□□□ 13.9
SMNDC1O75940 ZNF692-218ENST00000496053 694 ntTSL 316.6■□□□□ 0.251e-7■■□□□ 13.9
SMNDC1O75940 ZNF692-223ENST00000530699 896 ntTSL 1 (best)15.08■□□□□ 01e-7■■□□□ 13.9
SMNDC1O75940 REXO5-212ENST00000566993 2549 ntTSL 516.46■□□□□ 0.224e-10■■□□□ 13.8
SMNDC1O75940 ITGA5-213ENST00000553071 1013 ntTSL 1 (best)15.26■□□□□ 0.034e-10■■□□□ 13.8
SMNDC1O75940 REXO5-208ENST00000564274 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.154e-10■■□□□ 13.8
SMNDC1O75940 REXO5-201ENST00000261377 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.274e-10■■□□□ 13.8
SMNDC1O75940 ITGA5-202ENST00000435631 1240 ntTSL 213.21□□□□□ -0.294e-10■■□□□ 13.8
SMNDC1O75940 REXO5-202ENST00000348433 2604 ntTSL 1 (best) BASIC11.68□□□□□ -0.544e-10■■□□□ 13.8
SMNDC1O75940 REXO5-215ENST00000568334 743 ntTSL 39.13□□□□□ -0.954e-10■■□□□ 13.8
SMNDC1O75940 REXO5-203ENST00000561474 617 ntTSL 57.27□□□□□ -1.254e-10■■□□□ 13.8
SMNDC1O75940 SCARNA1-201ENST00000517138 166 ntBASIC9.9□□□□□ -0.823e-23■■□□□ 13.8
SMNDC1O75940 TRAF4-213ENST00000578917 484 ntTSL 45.92□□□□□ -1.462e-10■■□□□ 13.8
SMNDC1O75940 NOC2L-205ENST00000487214 865 ntTSL 317.23■□□□□ 0.353e-6■■□□□ 13.8
SMNDC1O75940 AKNA-203ENST00000312033 3334 ntTSL 1 (best) BASIC13.37□□□□□ -0.272e-13■■□□□ 13.8
SMNDC1O75940 HNRNPH1-238ENST00000521116 806 ntTSL 418.86■□□□□ 0.612e-10■■□□□ 13.8
SMNDC1O75940 HNRNPH1-212ENST00000505087 592 ntTSL 315.88■□□□□ 0.132e-10■■□□□ 13.8
SMNDC1O75940 HNRNPH1-225ENST00000515158 850 ntTSL 414.21□□□□□ -0.132e-10■■□□□ 13.8
SMNDC1O75940 HNRNPH1-220ENST00000513225 805 ntTSL 412.65□□□□□ -0.382e-10■■□□□ 13.8
SMNDC1O75940 HNRNPH1-209ENST00000504348 594 ntTSL 412.08□□□□□ -0.482e-10■■□□□ 13.8
SMNDC1O75940 HNRNPH1-233ENST00000519455 451 ntTSL 411.87□□□□□ -0.512e-10■■□□□ 13.8
SMNDC1O75940 HNRNPH1-234ENST00000519707 582 ntTSL 211.87□□□□□ -0.512e-10■■□□□ 13.8
SMNDC1O75940 HNRNPH1-222ENST00000513972 761 ntTSL 211.35□□□□□ -0.592e-10■■□□□ 13.8
SMNDC1O75940 MAPK8IP3-213ENST00000568271 752 ntTSL 513.02□□□□□ -0.333e-7■■□□□ 13.8
SMNDC1O75940 ACTN4-210ENST00000588618 1729 ntTSL 1 (best)20.01■□□□□ 0.791e-7■■□□□ 13.8
SMNDC1O75940 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.62■□□□□ 0.411e-7■■□□□ 13.8
SMNDC1O75940 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.31e-7■■□□□ 13.8
SMNDC1O75940 ACTN4-211ENST00000589528 441 ntTSL 213.86□□□□□ -0.191e-7■■□□□ 13.8
SMNDC1O75940 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC13.79□□□□□ -0.21e-7■■□□□ 13.8
SMNDC1O75940 ACTN4-209ENST00000586538 546 ntTSL 510.16□□□□□ -0.781e-7■■□□□ 13.8
SMNDC1O75940 SNORD19B-201ENST00000459623 84 ntBASIC6.14□□□□□ -1.432e-21■■□□□ 13.8
SMNDC1O75940 SRRM2-213ENST00000573311 732 ntTSL 213.32□□□□□ -0.285e-7■■□□□ 13.7
SMNDC1O75940 SRRM2-210ENST00000572721 841 ntTSL 212.69□□□□□ -0.385e-7■■□□□ 13.7
SMNDC1O75940 SRRM2-211ENST00000572883 887 ntTSL 29.44□□□□□ -0.95e-7■■□□□ 13.7
SMNDC1O75940 VIL1-202ENST00000392114 1968 ntTSL 2 BASIC11.03□□□□□ -0.642e-7■■□□□ 13.7
SMNDC1O75940 VIL1-201ENST00000248444 6531 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.82e-7■■□□□ 13.7
SMNDC1O75940 PRPF38B-201ENST00000370021 3728 ntTSL 1 (best) BASIC11.1□□□□□ -0.633e-7■■□□□ 13.7
SMNDC1O75940 PRPF38B-203ENST00000370025 3693 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.713e-7■■□□□ 13.7
SMNDC1O75940 PRPF38B-205ENST00000485810 1352 ntTSL 25.43□□□□□ -1.543e-7■■□□□ 13.7
SMNDC1O75940 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.961e-7■■□□□ 13.7
SMNDC1O75940 DENND4B-202ENST00000368646 3781 ntAPPRIS ALT2 TSL 514.78□□□□□ -0.041e-7■■□□□ 13.7
SMNDC1O75940 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.352e-7■■□□□ 13.7
SMNDC1O75940 SLC17A9-207ENST00000488738 3992 ntTSL 212.9□□□□□ -0.342e-7■■□□□ 13.7
SMNDC1O75940 SLC17A9-202ENST00000370351 3580 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.362e-7■■□□□ 13.7
SMNDC1O75940 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.12■■□□□ 1.456e-7■■□□□ 13.7
SMNDC1O75940 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC22.38■■□□□ 1.176e-7■■□□□ 13.7
SMNDC1O75940 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.26■■□□□ 1.156e-7■■□□□ 13.7
SMNDC1O75940 FDFT1-203ENST00000446331 1558 ntTSL 221.87■■□□□ 1.096e-7■■□□□ 13.7
SMNDC1O75940 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.72■■□□□ 1.076e-7■■□□□ 13.7
Retrieved 100 of 11,362 protein–RNA pairs in 179.5 ms