Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
CHKB-CPT1BH3BT56 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC11.15□□□□□ -0.63
CHKB-CPT1BH3BT56 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.63
CHKB-CPT1BH3BT56 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
CHKB-CPT1BH3BT56 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.63
CHKB-CPT1BH3BT56 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC11.15□□□□□ -0.63
CHKB-CPT1BH3BT56 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.63
CHKB-CPT1BH3BT56 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 KRT18P10-201ENST00000388836 1287 ntBASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 OXCT2P1-201ENST00000447263 1535 ntBASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
CHKB-CPT1BH3BT56 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 AC099398.1-201ENST00000567919 2776 ntBASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 GABARAPL3-202ENST00000624044 1851 ntBASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 EI24-204ENST00000527235 1625 ntTSL 5 BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 AC112907.3-201ENST00000577781 2400 ntBASIC11.13□□□□□ -0.63
CHKB-CPT1BH3BT56 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC11.12□□□□□ -0.63
CHKB-CPT1BH3BT56 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms