Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC8.24□□□□□ -1.09
COL4A5P29400 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
COL4A5P29400 AC119674.1-201ENST00000641611 1210 ntBASIC8.24□□□□□ -1.09
COL4A5P29400 MAP2-203ENST00000361559 2038 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
COL4A5P29400 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 PRRC2C-204ENST00000426496 10175 ntAPPRIS P2 TSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 KIZ-AS1-203ENST00000616177 5370 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 OR2A1-202ENST00000641044 4632 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
COL4A5P29400 HNRNPU-219ENST00000639628 4546 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 KBTBD11-OT1-204ENST00000635855 6169 ntAPPRIS P5 TSL 5 BASIC8.24□□□□□ -1.09
COL4A5P29400 TTI1-201ENST00000373447 3825 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 NAPEPLD-209ENST00000465647 2380 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 RBM11-201ENST00000400577 1934 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 LINC01140-201ENST00000461990 3181 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 DUBR-202ENST00000466734 2737 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 SORL1-212ENST00000534286 3501 ntTSL 2 BASIC8.24□□□□□ -1.09
COL4A5P29400 PSMD5-AS1-213ENST00000640327 3531 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
COL4A5P29400 RNA5SP474-201ENST00000391234 90 ntBASIC8.24□□□□□ -1.09
COL4A5P29400 YWHAZP4-201ENST00000392459 708 ntBASIC8.24□□□□□ -1.09
COL4A5P29400 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
COL4A5P29400 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC8.24□□□□□ -1.09
COL4A5P29400 HBG2-204ENST00000444587 307 ntTSL 2 BASIC8.24□□□□□ -1.09
COL4A5P29400 RN7SL187P-201ENST00000495587 303 ntBASIC8.24□□□□□ -1.09
COL4A5P29400 SCG5-207ENST00000497208 949 ntTSL 5 BASIC8.24□□□□□ -1.09
COL4A5P29400 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC8.24□□□□□ -1.09
COL4A5P29400 TBCA-209ENST00000522370 435 ntTSL 3 BASIC8.24□□□□□ -1.09
COL4A5P29400 UBE2CP1-201ENST00000557130 554 ntBASIC8.24□□□□□ -1.09
COL4A5P29400 AC012146.2-201ENST00000576545 416 ntBASIC8.24□□□□□ -1.09
COL4A5P29400 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC8.24□□□□□ -1.09
COL4A5P29400 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC8.24□□□□□ -1.09
COL4A5P29400 AP002345.2-201ENST00000609961 904 ntBASIC8.24□□□□□ -1.09
COL4A5P29400 ZNF365-211ENST00000614806 877 ntTSL 5 BASIC8.24□□□□□ -1.09
COL4A5P29400 AC124045.1-201ENST00000606008 1953 ntBASIC8.24□□□□□ -1.09
COL4A5P29400 TCL6-201ENST00000352367 3398 ntTSL 2 BASIC8.24□□□□□ -1.09
COL4A5P29400 MYO6-208ENST00000627432 4074 ntTSL 5 BASIC8.24□□□□□ -1.09
COL4A5P29400 ZEB2-234ENST00000636413 8984 ntTSL 5 BASIC8.23□□□□□ -1.09
COL4A5P29400 OXCT1-204ENST00000509987 1441 ntTSL 2 BASIC8.23□□□□□ -1.09
COL4A5P29400 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC8.23□□□□□ -1.09
COL4A5P29400 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC8.23□□□□□ -1.09
COL4A5P29400 KCNMB2-202ENST00000420517 1563 ntAPPRIS P1 TSL 5 BASIC8.23□□□□□ -1.09
COL4A5P29400 SCIN-209ENST00000519209 2660 ntTSL 2 BASIC8.23□□□□□ -1.09
COL4A5P29400 CPEB1-209ENST00000614918 4882 ntTSL 5 BASIC8.23□□□□□ -1.09
COL4A5P29400 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
COL4A5P29400 CDH7-202ENST00000397968 12231 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
COL4A5P29400 RNU6-1017P-201ENST00000363613 106 ntBASIC8.23□□□□□ -1.09
COL4A5P29400 RN7SKP47-201ENST00000365347 328 ntBASIC8.23□□□□□ -1.09
COL4A5P29400 GCNT1P4-201ENST00000404096 329 ntBASIC8.23□□□□□ -1.09
COL4A5P29400 AC245014.1-201ENST00000427732 381 ntTSL 5 BASIC8.23□□□□□ -1.09
COL4A5P29400 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC8.23□□□□□ -1.09
COL4A5P29400 AL645939.3-201ENST00000435408 225 ntBASIC8.23□□□□□ -1.09
COL4A5P29400 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC8.23□□□□□ -1.09
COL4A5P29400 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC8.23□□□□□ -1.09
COL4A5P29400 PDE4DIP-208ENST00000464103 1055 ntTSL 5 BASIC8.23□□□□□ -1.09
COL4A5P29400 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC8.23□□□□□ -1.09
COL4A5P29400 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC8.23□□□□□ -1.09
COL4A5P29400 AC004805.3-201ENST00000603178 310 ntBASIC8.23□□□□□ -1.09
COL4A5P29400 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC8.23□□□□□ -1.09
COL4A5P29400 TSHZ2-201ENST00000329613 3093 ntTSL 4 BASIC8.23□□□□□ -1.09
COL4A5P29400 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC8.23□□□□□ -1.09
COL4A5P29400 SETD5-204ENST00000406341 6582 ntAPPRIS P1 TSL 5 BASIC8.23□□□□□ -1.09
COL4A5P29400 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
COL4A5P29400 PTBP3-205ENST00000374257 7240 ntAPPRIS ALT1 TSL 2 BASIC8.23□□□□□ -1.09
COL4A5P29400 FAM114A1-201ENST00000358869 4050 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
COL4A5P29400 AC010487.3-201ENST00000634278 1966 ntAPPRIS P1 TSL 2 BASIC8.23□□□□□ -1.09
COL4A5P29400 GSTO2-202ENST00000369707 6423 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 PDPR-201ENST00000288050 9255 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 SESTD1-203ENST00000428443 10615 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 BAAT-201ENST00000259407 3377 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 RHOBTB1-202ENST00000357917 4339 ntAPPRIS P1 TSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 SLC24A1-209ENST00000537259 3983 ntAPPRIS ALT2 TSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC8.22□□□□□ -1.09
COL4A5P29400 AC110998.1-201ENST00000519029 2053 ntBASIC8.22□□□□□ -1.09
COL4A5P29400 RNF139-AS1-201ENST00000499418 5654 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 AP000866.1-202ENST00000529392 2792 ntTSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 ATG13-203ENST00000524625 4014 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 STAU1-210ENST00000614381 3054 ntAPPRIS ALT2 TSL 5 BASIC8.22□□□□□ -1.09
COL4A5P29400 SVIL-201ENST00000355867 7586 ntAPPRIS P4 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 FGF9-201ENST00000382353 4220 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 RNA5SP435-201ENST00000364044 108 ntBASIC8.22□□□□□ -1.09
COL4A5P29400 RPL9P21-201ENST00000392269 505 ntBASIC8.22□□□□□ -1.09
COL4A5P29400 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC8.22□□□□□ -1.09
COL4A5P29400 RN7SKP108-201ENST00000411367 328 ntBASIC8.22□□□□□ -1.09
COL4A5P29400 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC8.22□□□□□ -1.09
COL4A5P29400 AC073842.2-201ENST00000494221 572 ntTSL 4 BASIC8.22□□□□□ -1.09
COL4A5P29400 SNX18P25-201ENST00000510539 758 ntBASIC8.22□□□□□ -1.09
COL4A5P29400 IGLVIV-64-201ENST00000518581 301 ntBASIC8.22□□□□□ -1.09
COL4A5P29400 CLEC7A-208ENST00000525605 573 ntTSL 4 BASIC8.22□□□□□ -1.09
COL4A5P29400 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC8.22□□□□□ -1.09
COL4A5P29400 NANOGNBP2-201ENST00000544753 553 ntBASIC8.22□□□□□ -1.09
COL4A5P29400 AC023968.1-201ENST00000560719 475 ntBASIC8.22□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms