RNA–Protein interactions for RNA: ENST00000461990.1

LINC01140-201, Transcript of long intergenic non-protein coding RNA 1140, humanhuman

TSL 1 (best) BASIC

Gene LINC01140, Length 3,181 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01140-201ENST00000461990 PELP1Q8IZL8 1130 aaKnown RBP16.21■□□□□ 0.19
LINC01140-201ENST00000461990 NISCHQ9Y2I1 1504 aa16.05■□□□□ 0.16
LINC01140-201ENST00000461990 MYT1Q01538 1121 aa15.82■□□□□ 0.12
LINC01140-201ENST00000461990 HRCP23327 699 aa15.79■□□□□ 0.12
LINC01140-201ENST00000461990 PPARGC1BQ86YN6 1023 aaKnown RBP15.17■□□□□ 0.02
LINC01140-201ENST00000461990 SCAF1Q9H7N4 1312 aaKnown RBP15.15■□□□□ 0.02
LINC01140-201ENST00000461990 TTBK1Q5TCY1 1321 aaPredicted RBP15.1■□□□□ 0.01
LINC01140-201ENST00000461990 PCGF6Q9BYE7 350 aa14.97□□□□□ -0.01
LINC01140-201ENST00000461990 MYO15BQ96JP2 1530 aa14.95□□□□□ -0.02
LINC01140-201ENST00000461990 DCAF1Q9Y4B6 1507 aa14.85□□□□□ -0.03
LINC01140-201ENST00000461990 CCDC180Q9P1Z9 1646 aa14.81□□□□□ -0.04
LINC01140-201ENST00000461990 ZEB1P37275 1124 aaPredicted RBP14.73□□□□□ -0.05
LINC01140-201ENST00000461990 ACIN1Q9UKV3 1341 aaKnown RBP14.67□□□□□ -0.06
LINC01140-201ENST00000461990 TRIM26Q12899 539 aaPredicted RBP14.57□□□□□ -0.08
LINC01140-201ENST00000461990 CHIC1Q5VXU3 224 aa14.52□□□□□ -0.08
LINC01140-201ENST00000461990 NEUROD1Q13562 356 aa14.51□□□□□ -0.09
LINC01140-201ENST00000461990 GTF3C3Q9Y5Q9 886 aa14.46□□□□□ -0.09
LINC01140-201ENST00000461990 BCL11AQ9H165 835 aa14.44□□□□□ -0.1
LINC01140-201ENST00000461990 CENPBP07199 599 aaPredicted RBP14.44□□□□□ -0.1
LINC01140-201ENST00000461990 AEBP2Q6ZN18 517 aaPredicted RBP14.32□□□□□ -0.12
LINC01140-201ENST00000461990 SUPT5HO00267 1087 aaKnown RBP14.31□□□□□ -0.12
LINC01140-201ENST00000461990 PRKCSHP14314 528 aaPredicted RBP14.3□□□□□ -0.12
LINC01140-201ENST00000461990 FAM9AQ8IZU1 332 aaPredicted RBP14.29□□□□□ -0.12
LINC01140-201ENST00000461990 ANP32EQ9BTT0 268 aa14.16□□□□□ -0.14
LINC01140-201ENST00000461990 SHROOM4Q9ULL8 1493 aa14.16□□□□□ -0.14
LINC01140-201ENST00000461990 ERICH6Q7L0X2 663 aa14.14□□□□□ -0.15
LINC01140-201ENST00000461990 APLP2Q06481 763 aa14.06□□□□□ -0.16
LINC01140-201ENST00000461990 DIEXFQ68CQ4 756 aaKnown RBP14.06□□□□□ -0.16
LINC01140-201ENST00000461990 LOC105371045A0A1W2PR82 267 aa14.05□□□□□ -0.16
LINC01140-201ENST00000461990 CLSPNQ9HAW4 1339 aa13.97□□□□□ -0.17
LINC01140-201ENST00000461990 ABCC9O60706 1549 aa13.95□□□□□ -0.18
LINC01140-201ENST00000461990 SLC24A1O60721 1099 aa13.94□□□□□ -0.18
LINC01140-201ENST00000461990 TRIM41Q8WV44 630 aa13.93□□□□□ -0.18
LINC01140-201ENST00000461990 CSRNP3Q8WYN3 585 aa13.91□□□□□ -0.18
LINC01140-201ENST00000461990 TSHZ2Q9NRE2 1034 aa13.82□□□□□ -0.2
LINC01140-201ENST00000461990 ZCCHC6Q5VYS8 1495 aaKnown RBP13.8□□□□□ -0.2
LINC01140-201ENST00000461990 SUPT16HQ9Y5B9 1047 aaKnown RBP13.73□□□□□ -0.21
LINC01140-201ENST00000461990 ZNF316A6NFI3 1004 aaPredicted RBP13.72□□□□□ -0.21
LINC01140-201ENST00000461990 CCER1Q8TC90 406 aaPredicted RBP13.71□□□□□ -0.21
LINC01140-201ENST00000461990 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.67□□□□□ -0.22
LINC01140-201ENST00000461990 YTHDC1Q96MU7 727 aaKnown RBP13.66□□□□□ -0.22
LINC01140-201ENST00000461990 MIER1Q8N108 512 aa13.61□□□□□ -0.23
LINC01140-201ENST00000461990 RB1CC1Q8TDY2 1594 aa13.6□□□□□ -0.23
LINC01140-201ENST00000461990 NACADO15069 1562 aa13.58□□□□□ -0.24
LINC01140-201ENST00000461990 MYT1LQ9UL68 1186 aa13.53□□□□□ -0.24
LINC01140-201ENST00000461990 RBM19Q9Y4C8 960 aaKnown RBP13.42□□□□□ -0.26
LINC01140-201ENST00000461990 ERICH6BQ5W0A0 696 aa13.41□□□□□ -0.26
LINC01140-201ENST00000461990 UBE2Q2Q8WVN8 375 aa13.41□□□□□ -0.26
LINC01140-201ENST00000461990 ANO8Q9HCE9 1232 aaPredicted RBP13.4□□□□□ -0.26
LINC01140-201ENST00000461990 WRNQ14191 1432 aaPredicted RBP eCLIP13.37□□□□□ -0.27
LINC01140-201ENST00000461990 MSH5O43196 834 aa13.36□□□□□ -0.27
LINC01140-201ENST00000461990 FANCIQ9NVI1 1328 aa13.35□□□□□ -0.27
LINC01140-201ENST00000461990 UNC13AQ9UPW8 1703 aa13.33□□□□□ -0.28
LINC01140-201ENST00000461990 DEKP35659 375 aaKnown RBP13.26□□□□□ -0.29
LINC01140-201ENST00000461990 SALL2Q9Y467 1007 aaPredicted RBP13.22□□□□□ -0.29
LINC01140-201ENST00000461990 BICRAQ9NZM4 1560 aa13.15□□□□□ -0.3
LINC01140-201ENST00000461990 FKBP8Q14318 412 aa13.14□□□□□ -0.31
LINC01140-201ENST00000461990 DAXXQ9UER7 740 aaPredicted RBP13.1□□□□□ -0.31
LINC01140-201ENST00000461990 BCANQ96GW7 911 aa13.1□□□□□ -0.31
LINC01140-201ENST00000461990 EIF5BO60841 1220 aaKnown RBP13.09□□□□□ -0.31
LINC01140-201ENST00000461990 NEFLP07196 543 aa13.04□□□□□ -0.32
LINC01140-201ENST00000461990 DCAF8L2P0C7V8 631 aa13.04□□□□□ -0.32
LINC01140-201ENST00000461990 RSF1Q96T23 1441 aaPredicted RBP13.03□□□□□ -0.32
LINC01140-201ENST00000461990 CCDC136Q96JN2 1154 aa13.02□□□□□ -0.32
LINC01140-201ENST00000461990 CEP162Q5TB80 1403 aa13□□□□□ -0.33
LINC01140-201ENST00000461990 SCRIBQ14160 1630 aa12.98□□□□□ -0.33
LINC01140-201ENST00000461990 PKNOX2Q96KN3 472 aa12.97□□□□□ -0.33
LINC01140-201ENST00000461990 CDK11AQ9UQ88 783 aaPredicted RBP12.97□□□□□ -0.33
LINC01140-201ENST00000461990 TNIKQ9UKE5 1360 aa12.94□□□□□ -0.34
LINC01140-201ENST00000461990 ITGAEP38570 1179 aa12.94□□□□□ -0.34
LINC01140-201ENST00000461990 EHMT2Q96KQ7 1210 aa12.93□□□□□ -0.34
LINC01140-201ENST00000461990 IL27Q8NEV9 243 aa12.91□□□□□ -0.34
LINC01140-201ENST00000461990 NOP58Q9Y2X3 529 aaKnown RBP12.91□□□□□ -0.34
LINC01140-201ENST00000461990 C11orf95C9JLR9 678 aaPredicted RBP12.9□□□□□ -0.34
LINC01140-201ENST00000461990 EIF4G1Q04637 1599 aaKnown RBP12.9□□□□□ -0.34
LINC01140-201ENST00000461990 KCNH8Q96L42 1107 aa12.89□□□□□ -0.35
LINC01140-201ENST00000461990 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.88□□□□□ -0.35
LINC01140-201ENST00000461990 PABPN1Q86U42 306 aaKnown RBP eCLIP12.88□□□□□ -0.35
LINC01140-201ENST00000461990 DHX57Q6P158 1386 aaKnown RBP12.87□□□□□ -0.35
LINC01140-201ENST00000461990 WASHC2AQ641Q2 1341 aa12.85□□□□□ -0.35
LINC01140-201ENST00000461990 CCER2I3L3R5 266 aa12.83□□□□□ -0.35
LINC01140-201ENST00000461990 NBR1Q14596 966 aa12.81□□□□□ -0.36
LINC01140-201ENST00000461990 WASHC2CQ9Y4E1 1318 aa12.81□□□□□ -0.36
LINC01140-201ENST00000461990 RTL5Q5HYW3 569 aaPredicted RBP12.8□□□□□ -0.36
LINC01140-201ENST00000461990 HNRNPUL2Q1KMD3 747 aaKnown RBP12.79□□□□□ -0.36
LINC01140-201ENST00000461990 DNAJC5BQ9UF47 199 aa12.79□□□□□ -0.36
LINC01140-201ENST00000461990 PAK3O75914 559 aaPredicted RBP12.79□□□□□ -0.36
LINC01140-201ENST00000461990 EEA1Q15075 1411 aa12.77□□□□□ -0.37
LINC01140-201ENST00000461990 RTN4Q9NQC3 1192 aaKnown RBP12.76□□□□□ -0.37
LINC01140-201ENST00000461990 USP35Q9P2H5 1018 aa12.75□□□□□ -0.37
LINC01140-201ENST00000461990 CC2D2AQ9P2K1 1620 aa12.75□□□□□ -0.37
LINC01140-201ENST00000461990 CUX2O14529 1486 aa12.75□□□□□ -0.37
LINC01140-201ENST00000461990 PPP4R2Q9NY27 417 aa12.75□□□□□ -0.37
LINC01140-201ENST00000461990 RSPH6AQ9H0K4 717 aa12.73□□□□□ -0.37
LINC01140-201ENST00000461990 IPO9Q96P70 1041 aaKnown RBP12.72□□□□□ -0.37
LINC01140-201ENST00000461990 PODXL2Q9NZ53 605 aa12.72□□□□□ -0.37
LINC01140-201ENST00000461990 PPP1R15AO75807 674 aaPredicted RBP12.7□□□□□ -0.38
LINC01140-201ENST00000461990 GLIPR1L2Q4G1C9 344 aa12.7□□□□□ -0.38
LINC01140-201ENST00000461990 GOLGA3Q08378 1498 aa12.69□□□□□ -0.38
LINC01140-201ENST00000461990 PLEKHG5O94827 1062 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms