Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC11.57□□□□□ -0.56
CUX1P39880 AC025262.3-201ENST00000623666 360 ntBASIC11.57□□□□□ -0.56
CUX1P39880 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC11.57□□□□□ -0.56
CUX1P39880 UOX-205ENST00000640983 544 ntTSL 4 BASIC11.57□□□□□ -0.56
CUX1P39880 GFOD1-202ENST00000379284 8061 ntTSL 2 BASIC11.57□□□□□ -0.56
CUX1P39880 PTPRK-206ENST00000368215 4651 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
CUX1P39880 PSMC1P6-201ENST00000477233 1319 ntBASIC11.57□□□□□ -0.56
CUX1P39880 NMD3-201ENST00000351193 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CUX1P39880 PTPRR-203ENST00000378778 2632 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CUX1P39880 AL355488.1-201ENST00000449169 2611 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CUX1P39880 CBFA2T2-204ENST00000359606 7274 ntTSL 2 BASIC11.57□□□□□ -0.56
CUX1P39880 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 CPM-211ENST00000551568 6655 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 LCT-201ENST00000264162 6279 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 SLC16A12-201ENST00000371790 4617 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
CUX1P39880 PRIM2-207ENST00000615550 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 RNU6-1017P-201ENST00000363613 106 ntBASIC11.56□□□□□ -0.56
CUX1P39880 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC11.56□□□□□ -0.56
CUX1P39880 RN7SL216P-201ENST00000471607 298 ntBASIC11.56□□□□□ -0.56
CUX1P39880 AC022296.2-201ENST00000512424 202 ntBASIC11.56□□□□□ -0.56
CUX1P39880 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC11.56□□□□□ -0.56
CUX1P39880 AC020914.7-201ENST00000594477 545 ntBASIC11.56□□□□□ -0.56
CUX1P39880 MIR6721-201ENST00000617181 87 ntBASIC11.56□□□□□ -0.56
CUX1P39880 AL078581.3-201ENST00000627304 744 ntTSL 5 BASIC11.56□□□□□ -0.56
CUX1P39880 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 SV2C-202ENST00000502798 11035 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 PSMC1P4-201ENST00000515236 1327 ntBASIC11.56□□□□□ -0.56
CUX1P39880 GPBP1-208ENST00000514387 3310 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 SLFN12L-201ENST00000260908 3119 ntAPPRIS P2 TSL 5 BASIC11.56□□□□□ -0.56
CUX1P39880 ZNF507-201ENST00000311921 7638 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 ICA1L-202ENST00000392237 5173 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 ZNF197-205ENST00000396058 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 TNC-210ENST00000535648 7508 ntTSL 5 BASIC11.56□□□□□ -0.56
CUX1P39880 E2F8-201ENST00000250024 3240 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 AC110998.1-201ENST00000519029 2053 ntBASIC11.56□□□□□ -0.56
CUX1P39880 INSR-202ENST00000341500 8954 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 IRAK4-201ENST00000431837 4147 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 DNAH11-212ENST00000620169 13670 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
CUX1P39880 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CUX1P39880 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC11.56□□□□□ -0.56
CUX1P39880 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CUX1P39880 RBBP4P5-201ENST00000398583 1266 ntBASIC11.55□□□□□ -0.56
CUX1P39880 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC11.55□□□□□ -0.56
CUX1P39880 RPL5P6-201ENST00000425640 886 ntBASIC11.55□□□□□ -0.56
CUX1P39880 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
CUX1P39880 RPL26P30-201ENST00000453533 435 ntBASIC11.55□□□□□ -0.56
CUX1P39880 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC11.55□□□□□ -0.56
CUX1P39880 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC11.55□□□□□ -0.56
CUX1P39880 HMGN1P17-201ENST00000513734 295 ntBASIC11.55□□□□□ -0.56
CUX1P39880 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC11.55□□□□□ -0.56
CUX1P39880 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC11.55□□□□□ -0.56
CUX1P39880 GSTO2-202ENST00000369707 6423 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CUX1P39880 ZNF471-201ENST00000308031 6287 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CUX1P39880 ADGRB3-201ENST00000238918 2927 ntTSL 2 BASIC11.55□□□□□ -0.56
CUX1P39880 AL591379.1-201ENST00000315293 3739 ntTSL 2 BASIC11.55□□□□□ -0.56
CUX1P39880 TNS3-201ENST00000311160 7618 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CUX1P39880 MBL2-201ENST00000373968 3569 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CUX1P39880 IYD-201ENST00000229447 7513 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CUX1P39880 CDC42SE1-201ENST00000357235 3045 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CUX1P39880 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
CUX1P39880 AC096564.2-201ENST00000512428 3147 ntTSL 5 BASIC11.55□□□□□ -0.56
CUX1P39880 MIR188-201ENST00000385034 86 ntBASIC11.55□□□□□ -0.56
CUX1P39880 AC005522.1-201ENST00000395416 346 ntBASIC11.55□□□□□ -0.56
CUX1P39880 GPN3P1-201ENST00000423883 535 ntBASIC11.55□□□□□ -0.56
CUX1P39880 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC11.55□□□□□ -0.56
CUX1P39880 RN7SL187P-201ENST00000495587 303 ntBASIC11.55□□□□□ -0.56
CUX1P39880 PTTG2-201ENST00000504686 691 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
CUX1P39880 AC091849.1-201ENST00000509920 121 ntBASIC11.55□□□□□ -0.56
CUX1P39880 AC135983.3-201ENST00000528049 1226 ntBASIC11.55□□□□□ -0.56
CUX1P39880 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC11.55□□□□□ -0.56
CUX1P39880 AL445383.1-201ENST00000554689 874 ntBASIC11.55□□□□□ -0.56
CUX1P39880 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC11.55□□□□□ -0.56
CUX1P39880 COL12A1-207ENST00000483888 9637 ntAPPRIS ALT1 TSL 5 BASIC11.54□□□□□ -0.56
CUX1P39880 WDR64-204ENST00000437684 2310 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CUX1P39880 PHF21A-201ENST00000323180 3675 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CUX1P39880 CSMD1-202ENST00000400186 10938 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
CUX1P39880 CSMD1-217ENST00000602723 10938 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
CUX1P39880 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CUX1P39880 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC11.54□□□□□ -0.56
CUX1P39880 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
CUX1P39880 ANKFN1-202ENST00000566473 3840 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
CUX1P39880 PIK3AP1-203ENST00000371110 3151 ntTSL 2 BASIC11.54□□□□□ -0.56
CUX1P39880 NAIP-204ENST00000503719 5347 ntTSL 5 BASIC11.54□□□□□ -0.56
CUX1P39880 FGFR2-206ENST00000358487 4255 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CUX1P39880 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC11.54□□□□□ -0.56
CUX1P39880 PCDH15-224ENST00000612394 5765 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
CUX1P39880 FMOD-201ENST00000354955 3310 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CUX1P39880 PTP4A2-218ENST00000602725 3353 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CUX1P39880 RBM11-201ENST00000400577 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
CUX1P39880 EIF5B-201ENST00000289371 5777 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
CUX1P39880 TAS2R42-201ENST00000334266 945 ntAPPRIS P1 BASIC11.54□□□□□ -0.56
CUX1P39880 RPL24P7-201ENST00000399435 453 ntBASIC11.54□□□□□ -0.56
CUX1P39880 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC11.54□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms