RNA–Protein interactions for RNA: ENST00000602723.5

CSMD1-217, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 10,938 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-217ENST00000602723 DCAF8L2P0C7V8 631 aa16.03■□□□□ 0.16
CSMD1-217ENST00000602723 PELP1Q8IZL8 1130 aaKnown RBP15.58■□□□□ 0.09
CSMD1-217ENST00000602723 SUPT5HO00267 1087 aaKnown RBP15.39■□□□□ 0.05
CSMD1-217ENST00000602723 EHMT2Q96KQ7 1210 aa15.09■□□□□ 0.01
CSMD1-217ENST00000602723 SHROOM4Q9ULL8 1493 aa15.05■□□□□ 0
CSMD1-217ENST00000602723 APLP2Q06481 763 aa14.94□□□□□ -0.02
CSMD1-217ENST00000602723 ERICH6Q7L0X2 663 aa14.9□□□□□ -0.02
CSMD1-217ENST00000602723 NISCHQ9Y2I1 1504 aa14.89□□□□□ -0.03
CSMD1-217ENST00000602723 CCER1Q8TC90 406 aaPredicted RBP14.82□□□□□ -0.04
CSMD1-217ENST00000602723 CENPBP07199 599 aaPredicted RBP14.81□□□□□ -0.04
CSMD1-217ENST00000602723 PCGF6Q9BYE7 350 aa14.74□□□□□ -0.05
CSMD1-217ENST00000602723 MYT1Q01538 1121 aa14.7□□□□□ -0.06
CSMD1-217ENST00000602723 TTBK1Q5TCY1 1321 aaPredicted RBP14.68□□□□□ -0.06
CSMD1-217ENST00000602723 ZEB1P37275 1124 aaPredicted RBP14.61□□□□□ -0.07
CSMD1-217ENST00000602723 FAM9AQ8IZU1 332 aaPredicted RBP14.58□□□□□ -0.08
CSMD1-217ENST00000602723 NEFLP07196 543 aa14.54□□□□□ -0.08
CSMD1-217ENST00000602723 YTHDC1Q96MU7 727 aaKnown RBP14.41□□□□□ -0.1
CSMD1-217ENST00000602723 RANGAP1P46060 587 aaPredicted RBP14.37□□□□□ -0.11
CSMD1-217ENST00000602723 ATP1B4Q9UN42 357 aaPredicted RBP14.26□□□□□ -0.13
CSMD1-217ENST00000602723 TRIM41Q8WV44 630 aa14.24□□□□□ -0.13
CSMD1-217ENST00000602723 DAXXQ9UER7 740 aaPredicted RBP14.23□□□□□ -0.13
CSMD1-217ENST00000602723 UBTFP17480 764 aaKnown RBP14.19□□□□□ -0.14
CSMD1-217ENST00000602723 PPARGC1BQ86YN6 1023 aaKnown RBP13.98□□□□□ -0.17
CSMD1-217ENST00000602723 TRIM26Q12899 539 aaPredicted RBP13.98□□□□□ -0.17
CSMD1-217ENST00000602723 HRCP23327 699 aa13.96□□□□□ -0.18
CSMD1-217ENST00000602723 RTL5Q5HYW3 569 aaPredicted RBP13.93□□□□□ -0.18
CSMD1-217ENST00000602723 POLR3GLQ9BT43 218 aa13.91□□□□□ -0.18
CSMD1-217ENST00000602723 ZNF316A6NFI3 1004 aaPredicted RBP13.9□□□□□ -0.18
CSMD1-217ENST00000602723 ITGAEP38570 1179 aa13.8□□□□□ -0.2
CSMD1-217ENST00000602723 CLSPNQ9HAW4 1339 aa13.77□□□□□ -0.21
CSMD1-217ENST00000602723 CNGB1Q14028 1251 aaPredicted RBP13.75□□□□□ -0.21
CSMD1-217ENST00000602723 MYT1LQ9UL68 1186 aa13.71□□□□□ -0.22
CSMD1-217ENST00000602723 HNRNPUL2Q1KMD3 747 aaKnown RBP13.69□□□□□ -0.22
CSMD1-217ENST00000602723 DIEXFQ68CQ4 756 aaKnown RBP13.68□□□□□ -0.22
CSMD1-217ENST00000602723 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.67□□□□□ -0.22
CSMD1-217ENST00000602723 SLC4A1APQ9BWU0 796 aaKnown RBP13.65□□□□□ -0.22
CSMD1-217ENST00000602723 LOC105371045A0A1W2PR82 267 aa13.57□□□□□ -0.24
CSMD1-217ENST00000602723 CHIC1Q5VXU3 224 aa13.56□□□□□ -0.24
CSMD1-217ENST00000602723 BCANQ96GW7 911 aa13.53□□□□□ -0.24
CSMD1-217ENST00000602723 CDK11AQ9UQ88 783 aaPredicted RBP13.5□□□□□ -0.25
CSMD1-217ENST00000602723 GTF3C3Q9Y5Q9 886 aa13.49□□□□□ -0.25
CSMD1-217ENST00000602723 ZBTB47Q9UFB7 747 aaPredicted RBP13.44□□□□□ -0.26
CSMD1-217ENST00000602723 FAM50AQ14320 339 aaKnown RBP13.42□□□□□ -0.26
CSMD1-217ENST00000602723 ANP32CO43423 234 aa13.41□□□□□ -0.26
CSMD1-217ENST00000602723 NEUROD1Q13562 356 aa13.37□□□□□ -0.27
CSMD1-217ENST00000602723 CANXP27824 592 aaKnown RBP13.37□□□□□ -0.27
CSMD1-217ENST00000602723 ANP32AP39687 249 aaKnown RBP13.36□□□□□ -0.27
CSMD1-217ENST00000602723 TRIM52Q96A61 297 aa13.34□□□□□ -0.27
CSMD1-217ENST00000602723 ZNF326Q5BKZ1 582 aaKnown RBP13.31□□□□□ -0.28
CSMD1-217ENST00000602723 BCL11AQ9H165 835 aa13.3□□□□□ -0.28
CSMD1-217ENST00000602723 EIF5BO60841 1220 aaKnown RBP13.28□□□□□ -0.28
CSMD1-217ENST00000602723 ANP32BQ92688 251 aaKnown RBP13.25□□□□□ -0.29
CSMD1-217ENST00000602723 ACIN1Q9UKV3 1341 aaKnown RBP13.23□□□□□ -0.29
CSMD1-217ENST00000602723 NPM2Q86SE8 214 aaKnown RBP13.23□□□□□ -0.29
CSMD1-217ENST00000602723 SLC24A1O60721 1099 aa13.21□□□□□ -0.29
CSMD1-217ENST00000602723 GLIPR1L2Q4G1C9 344 aa13.21□□□□□ -0.29
CSMD1-217ENST00000602723 NEFMP07197 916 aa13.17□□□□□ -0.3
CSMD1-217ENST00000602723 HSP90AA1P07900 732 aaKnown RBP13.17□□□□□ -0.3
CSMD1-217ENST00000602723 UPF2Q9HAU5 1272 aaKnown RBP13.09□□□□□ -0.31
CSMD1-217ENST00000602723 FKBP8Q14318 412 aa13.05□□□□□ -0.32
CSMD1-217ENST00000602723 NBR1Q14596 966 aa13.03□□□□□ -0.32
CSMD1-217ENST00000602723 ARXQ96QS3 562 aa12.97□□□□□ -0.33
CSMD1-217ENST00000602723 HNRNPUQ00839 825 aaKnown RBP eCLIP12.96□□□□□ -0.34
CSMD1-217ENST00000602723 TONSLQ96HA7 1378 aa12.95□□□□□ -0.34
CSMD1-217ENST00000602723 CCDC136Q96JN2 1154 aa12.93□□□□□ -0.34
CSMD1-217ENST00000602723 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.9□□□□□ -0.34
CSMD1-217ENST00000602723 FBLN2P98095 1184 aa12.89□□□□□ -0.35
CSMD1-217ENST00000602723 FAM9BQ8IZU0 186 aa12.89□□□□□ -0.35
CSMD1-217ENST00000602723 ARID3CA6NKF2 412 aa12.87□□□□□ -0.35
CSMD1-217ENST00000602723 DCAF1Q9Y4B6 1507 aa12.85□□□□□ -0.35
CSMD1-217ENST00000602723 ZNF777Q9ULD5 760 aaPredicted RBP12.84□□□□□ -0.35
CSMD1-217ENST00000602723 P3H3Q8IVL6 736 aa12.84□□□□□ -0.35
CSMD1-217ENST00000602723 DDX10Q13206 875 aaKnown RBP12.83□□□□□ -0.36
CSMD1-217ENST00000602723 SALL2Q9Y467 1007 aaPredicted RBP12.81□□□□□ -0.36
CSMD1-217ENST00000602723 TMC1Q8TDI8 760 aa12.8□□□□□ -0.36
CSMD1-217ENST00000602723 PABPN1Q86U42 306 aaKnown RBP eCLIP12.8□□□□□ -0.36
CSMD1-217ENST00000602723 MYH16Q9H6N6 1097 aa12.79□□□□□ -0.36
CSMD1-217ENST00000602723 CDK11BP21127 795 aaKnown RBP12.79□□□□□ -0.36
CSMD1-217ENST00000602723 TNNT2P45379 298 aaPredicted RBP12.78□□□□□ -0.36
CSMD1-217ENST00000602723 BECN1Q14457 450 aa12.78□□□□□ -0.36
CSMD1-217ENST00000602723 ABCC9O60706 1549 aa12.78□□□□□ -0.36
CSMD1-217ENST00000602723 SCAF1Q9H7N4 1312 aaKnown RBP12.77□□□□□ -0.37
CSMD1-217ENST00000602723 TRIM44Q96DX7 344 aaPredicted RBP12.76□□□□□ -0.37
CSMD1-217ENST00000602723 WDR43Q15061 677 aaKnown RBP eCLIP12.76□□□□□ -0.37
CSMD1-217ENST00000602723 DDRGK1Q96HY6 314 aa12.76□□□□□ -0.37
CSMD1-217ENST00000602723 ESF1Q9H501 851 aaKnown RBP12.75□□□□□ -0.37
CSMD1-217ENST00000602723 MRS2Q9HD23 443 aa12.75□□□□□ -0.37
CSMD1-217ENST00000602723 IRX6P78412 446 aaPredicted RBP12.74□□□□□ -0.37
CSMD1-217ENST00000602723 STAG3Q9UJ98 1225 aa12.74□□□□□ -0.37
CSMD1-217ENST00000602723 CSRNP3Q8WYN3 585 aa12.73□□□□□ -0.37
CSMD1-217ENST00000602723 ANP32EQ9BTT0 268 aa12.73□□□□□ -0.37
CSMD1-217ENST00000602723 SCRIBQ14160 1630 aa12.72□□□□□ -0.37
CSMD1-217ENST00000602723 CHGAP10645 457 aaKnown RBP12.71□□□□□ -0.37
CSMD1-217ENST00000602723 GOLGA6L22H0YM25 854 aa12.71□□□□□ -0.38
CSMD1-217ENST00000602723 NCLP19338 710 aaKnown RBP12.7□□□□□ -0.38
CSMD1-217ENST00000602723 CCDC180Q9P1Z9 1646 aa12.7□□□□□ -0.38
CSMD1-217ENST00000602723 PTMAP06454 111 aaKnown RBP12.68□□□□□ -0.38
CSMD1-217ENST00000602723 MIER1Q8N108 512 aa12.66□□□□□ -0.38
CSMD1-217ENST00000602723 ERICH6BQ5W0A0 696 aa12.63□□□□□ -0.39
CSMD1-217ENST00000602723 ZRSR1Q15695 479 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms