RNA–Protein interactions for RNA: ENST00000378778.5

PTPRR-203, Transcript of protein tyrosine phosphatase, receptor type R, humanhuman

TSL 1 (best) BASIC

Gene PTPRR, Length 2,632 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRR-203ENST00000378778 NISCHQ9Y2I1 1504 aa16.09■□□□□ 0.17
PTPRR-203ENST00000378778 CHIC1Q5VXU3 224 aa14.34□□□□□ -0.11
PTPRR-203ENST00000378778 AEBP2Q6ZN18 517 aaPredicted RBP13.93□□□□□ -0.18
PTPRR-203ENST00000378778 HRCP23327 699 aa13.73□□□□□ -0.21
PTPRR-203ENST00000378778 CCDC180Q9P1Z9 1646 aa13.72□□□□□ -0.21
PTPRR-203ENST00000378778 ZCCHC6Q5VYS8 1495 aaKnown RBP13.71□□□□□ -0.21
PTPRR-203ENST00000378778 SHROOM4Q9ULL8 1493 aa13.55□□□□□ -0.24
PTPRR-203ENST00000378778 DCAF1Q9Y4B6 1507 aa13.51□□□□□ -0.25
PTPRR-203ENST00000378778 SUPT5HO00267 1087 aaKnown RBP13.5□□□□□ -0.25
PTPRR-203ENST00000378778 MYO15BQ96JP2 1530 aa13.44□□□□□ -0.26
PTPRR-203ENST00000378778 PELP1Q8IZL8 1130 aaKnown RBP13.36□□□□□ -0.27
PTPRR-203ENST00000378778 PCGF6Q9BYE7 350 aa13.28□□□□□ -0.28
PTPRR-203ENST00000378778 ZEB1P37275 1124 aaPredicted RBP13.23□□□□□ -0.29
PTPRR-203ENST00000378778 TRIM26Q12899 539 aaPredicted RBP13.18□□□□□ -0.3
PTPRR-203ENST00000378778 PPARGC1BQ86YN6 1023 aaKnown RBP13.07□□□□□ -0.32
PTPRR-203ENST00000378778 PHF23Q9BUL5 403 aaPredicted RBP13.05□□□□□ -0.32
PTPRR-203ENST00000378778 ABCC9O60706 1549 aa13.03□□□□□ -0.32
PTPRR-203ENST00000378778 MYT1Q01538 1121 aa12.93□□□□□ -0.34
PTPRR-203ENST00000378778 EHMT2Q96KQ7 1210 aa12.91□□□□□ -0.34
PTPRR-203ENST00000378778 LOC105371045A0A1W2PR82 267 aa12.9□□□□□ -0.35
PTPRR-203ENST00000378778 RB1CC1Q8TDY2 1594 aa12.84□□□□□ -0.35
PTPRR-203ENST00000378778 DCAF8L2P0C7V8 631 aa12.8□□□□□ -0.36
PTPRR-203ENST00000378778 RSF1Q96T23 1441 aaPredicted RBP12.79□□□□□ -0.36
PTPRR-203ENST00000378778 SCAF1Q9H7N4 1312 aaKnown RBP12.74□□□□□ -0.37
PTPRR-203ENST00000378778 TRIM41Q8WV44 630 aa12.71□□□□□ -0.37
PTPRR-203ENST00000378778 SLC24A1O60721 1099 aa12.66□□□□□ -0.38
PTPRR-203ENST00000378778 ACIN1Q9UKV3 1341 aaKnown RBP12.63□□□□□ -0.39
PTPRR-203ENST00000378778 CENPBP07199 599 aaPredicted RBP12.61□□□□□ -0.39
PTPRR-203ENST00000378778 SCRIBQ14160 1630 aa12.59□□□□□ -0.39
PTPRR-203ENST00000378778 WRNQ14191 1432 aaPredicted RBP eCLIP12.56□□□□□ -0.4
PTPRR-203ENST00000378778 NACADO15069 1562 aa12.54□□□□□ -0.4
PTPRR-203ENST00000378778 EIF4G1Q04637 1599 aaKnown RBP12.51□□□□□ -0.41
PTPRR-203ENST00000378778 BAZ1AQ9NRL2 1556 aaPredicted RBP12.5□□□□□ -0.41
PTPRR-203ENST00000378778 CCER1Q8TC90 406 aaPredicted RBP12.45□□□□□ -0.42
PTPRR-203ENST00000378778 DIEXFQ68CQ4 756 aaKnown RBP12.44□□□□□ -0.42
PTPRR-203ENST00000378778 NEUROD1Q13562 356 aa12.44□□□□□ -0.42
PTPRR-203ENST00000378778 EEA1Q15075 1411 aa12.43□□□□□ -0.42
PTPRR-203ENST00000378778 MROH2BQ7Z745 1585 aa12.41□□□□□ -0.42
PTPRR-203ENST00000378778 FAM9AQ8IZU1 332 aaPredicted RBP12.39□□□□□ -0.43
PTPRR-203ENST00000378778 GTF3C3Q9Y5Q9 886 aa12.38□□□□□ -0.43
PTPRR-203ENST00000378778 WIZO95785 1651 aa12.37□□□□□ -0.43
PTPRR-203ENST00000378778 TNIKQ9UKE5 1360 aa12.36□□□□□ -0.43
PTPRR-203ENST00000378778 CLSPNQ9HAW4 1339 aa12.36□□□□□ -0.43
PTPRR-203ENST00000378778 CECR2Q9BXF3 1484 aa12.34□□□□□ -0.43
PTPRR-203ENST00000378778 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.34□□□□□ -0.43
PTPRR-203ENST00000378778 PLPPR3Q6T4P5 718 aa12.34□□□□□ -0.43
PTPRR-203ENST00000378778 TOP2AP11388 1531 aaKnown RBP12.33□□□□□ -0.44
PTPRR-203ENST00000378778 ZNF316A6NFI3 1004 aaPredicted RBP12.33□□□□□ -0.44
PTPRR-203ENST00000378778 CEP162Q5TB80 1403 aa12.3□□□□□ -0.44
PTPRR-203ENST00000378778 DNAJC5BQ9UF47 199 aa12.29□□□□□ -0.44
PTPRR-203ENST00000378778 GOLGA3Q08378 1498 aa12.23□□□□□ -0.45
PTPRR-203ENST00000378778 SMARCA2P51531 1590 aa12.21□□□□□ -0.45
PTPRR-203ENST00000378778 SMARCA4P51532 1647 aa12.2□□□□□ -0.46
PTPRR-203ENST00000378778 KIF21BO75037 1637 aa12.19□□□□□ -0.46
PTPRR-203ENST00000378778 KCNA4P22459 653 aa12.18□□□□□ -0.46
PTPRR-203ENST00000378778 CCDC88BA6NC98 1476 aa12.18□□□□□ -0.46
PTPRR-203ENST00000378778 TTBK1Q5TCY1 1321 aaPredicted RBP12.15□□□□□ -0.46
PTPRR-203ENST00000378778 CSRNP3Q8WYN3 585 aa12.15□□□□□ -0.46
PTPRR-203ENST00000378778 BAZ1BQ9UIG0 1483 aaKnown RBP12.15□□□□□ -0.47
PTPRR-203ENST00000378778 ABCC8Q09428 1581 aa12.14□□□□□ -0.47
PTPRR-203ENST00000378778 CEP164Q9UPV0 1460 aa12.14□□□□□ -0.47
PTPRR-203ENST00000378778 SOGA1O94964 1423 aa12.09□□□□□ -0.47
PTPRR-203ENST00000378778 VPS8Q8N3P4 1428 aa12.07□□□□□ -0.48
PTPRR-203ENST00000378778 PEG3Q9GZU2 1588 aa12.07□□□□□ -0.48
PTPRR-203ENST00000378778 MIER1Q8N108 512 aa12.05□□□□□ -0.48
PTPRR-203ENST00000378778 RTN4Q9NQC3 1192 aaKnown RBP12.03□□□□□ -0.48
PTPRR-203ENST00000378778 UBTFP17480 764 aaKnown RBP12.02□□□□□ -0.49
PTPRR-203ENST00000378778 CLIP1P30622 1438 aa12.02□□□□□ -0.49
PTPRR-203ENST00000378778 RUSC2Q8N2Y8 1516 aa11.97□□□□□ -0.49
PTPRR-203ENST00000378778 UNC13AQ9UPW8 1703 aa11.97□□□□□ -0.49
PTPRR-203ENST00000378778 CUX2O14529 1486 aa11.96□□□□□ -0.5
PTPRR-203ENST00000378778 APLP2Q06481 763 aa11.95□□□□□ -0.5
PTPRR-203ENST00000378778 YTHDC1Q96MU7 727 aaKnown RBP11.95□□□□□ -0.5
PTPRR-203ENST00000378778 ERICH3Q5RHP9 1530 aa11.95□□□□□ -0.5
PTPRR-203ENST00000378778 SYNJ1O43426 1573 aa11.92□□□□□ -0.5
PTPRR-203ENST00000378778 SUPT16HQ9Y5B9 1047 aaKnown RBP11.9□□□□□ -0.5
PTPRR-203ENST00000378778 DHX57Q6P158 1386 aaKnown RBP11.9□□□□□ -0.5
PTPRR-203ENST00000378778 RRBP1Q9P2E9 1410 aaKnown RBP11.88□□□□□ -0.51
PTPRR-203ENST00000378778 TOP2BQ02880 1626 aa11.87□□□□□ -0.51
PTPRR-203ENST00000378778 HNRNPUL2Q1KMD3 747 aaKnown RBP11.87□□□□□ -0.51
PTPRR-203ENST00000378778 BIVM-ERCC5R4GMW8 1640 aa11.87□□□□□ -0.51
PTPRR-203ENST00000378778 ANP32EQ9BTT0 268 aa11.86□□□□□ -0.51
PTPRR-203ENST00000378778 RAPGEF2Q9Y4G8 1499 aa11.83□□□□□ -0.52
PTPRR-203ENST00000378778 MAP3K1Q13233 1512 aa11.81□□□□□ -0.52
PTPRR-203ENST00000378778 PRXQ9BXM0 1461 aa11.81□□□□□ -0.52
PTPRR-203ENST00000378778 TSHZ2Q9NRE2 1034 aa11.8□□□□□ -0.52
PTPRR-203ENST00000378778 ARAP1Q96P48 1450 aa11.79□□□□□ -0.52
PTPRR-203ENST00000378778 ADRA2BP18089 450 aa11.78□□□□□ -0.52
PTPRR-203ENST00000378778 TIMELESSQ9UNS1 1208 aa11.77□□□□□ -0.52
PTPRR-203ENST00000378778 BICRAQ9NZM4 1560 aa11.76□□□□□ -0.53
PTPRR-203ENST00000378778 ATAD2BQ9ULI0 1458 aa11.74□□□□□ -0.53
PTPRR-203ENST00000378778 CCNB3Q8WWL7 1395 aa11.73□□□□□ -0.53
PTPRR-203ENST00000378778 CCER2I3L3R5 266 aa11.69□□□□□ -0.54
PTPRR-203ENST00000378778 KIF27Q86VH2 1401 aa11.66□□□□□ -0.54
PTPRR-203ENST00000378778 MAPKBP1O60336 1514 aa11.66□□□□□ -0.54
PTPRR-203ENST00000378778 NEFLP07196 543 aa11.65□□□□□ -0.54
PTPRR-203ENST00000378778 TIAM1Q13009 1591 aa11.64□□□□□ -0.55
PTPRR-203ENST00000378778 MYT1LQ9UL68 1186 aa11.64□□□□□ -0.55
PTPRR-203ENST00000378778 SETD5Q9C0A6 1442 aa11.63□□□□□ -0.55
PTPRR-203ENST00000378778 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms