Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 RNF126P1-201ENST00000567452 1320 ntBASIC18.71■□□□□ 0.59
VCX3AQ9NNX9 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
VCX3AQ9NNX9 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
VCX3AQ9NNX9 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VCX3AQ9NNX9 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 IDNK-201ENST00000376417 511 ntTSL 5 BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 MIR7108-201ENST00000614319 87 ntBASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VCX3AQ9NNX9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 AC093484.2-201ENST00000580996 2166 ntBASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VCX3AQ9NNX9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 AC092720.2-201ENST00000602388 1665 ntBASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VCX3AQ9NNX9 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms