Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC17.42■□□□□ 0.38
NKX3-1Q99801 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC17.42■□□□□ 0.38
NKX3-1Q99801 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX3-1Q99801 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX3-1Q99801 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.42■□□□□ 0.38
NKX3-1Q99801 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX3-1Q99801 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.42■□□□□ 0.38
NKX3-1Q99801 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
NKX3-1Q99801 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC17.42■□□□□ 0.38
NKX3-1Q99801 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX3-1Q99801 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
NKX3-1Q99801 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
NKX3-1Q99801 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 AC091799.1-201ENST00000422823 811 ntBASIC17.41■□□□□ 0.38
NKX3-1Q99801 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.41■□□□□ 0.38
NKX3-1Q99801 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NKX3-1Q99801 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NKX3-1Q99801 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX3-1Q99801 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX3-1Q99801 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX3-1Q99801 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.4■□□□□ 0.38
NKX3-1Q99801 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX3-1Q99801 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX3-1Q99801 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX3-1Q99801 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
NKX3-1Q99801 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC17.4■□□□□ 0.38
NKX3-1Q99801 COX20-201ENST00000366528 568 ntTSL 2 BASIC17.4■□□□□ 0.38
NKX3-1Q99801 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.4■□□□□ 0.38
NKX3-1Q99801 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.4■□□□□ 0.38
NKX3-1Q99801 RAB43-208ENST00000615093 783 ntTSL 5 BASIC17.4■□□□□ 0.38
NKX3-1Q99801 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX3-1Q99801 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NKX3-1Q99801 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX3-1Q99801 AC138932.1-201ENST00000534164 6830 ntBASIC17.4■□□□□ 0.38
NKX3-1Q99801 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.4■□□□□ 0.38
NKX3-1Q99801 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX3-1Q99801 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX3-1Q99801 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.4■□□□□ 0.38
NKX3-1Q99801 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NKX3-1Q99801 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
NKX3-1Q99801 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.39■□□□□ 0.38
NKX3-1Q99801 AP000974.1-201ENST00000623909 2387 ntBASIC17.39■□□□□ 0.38
NKX3-1Q99801 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
NKX3-1Q99801 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
NKX3-1Q99801 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NKX3-1Q99801 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NKX3-1Q99801 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NKX3-1Q99801 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NKX3-1Q99801 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NKX3-1Q99801 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NKX3-1Q99801 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.39■□□□□ 0.37
NKX3-1Q99801 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
NKX3-1Q99801 KRT8P36-201ENST00000489121 1440 ntBASIC17.38■□□□□ 0.37
NKX3-1Q99801 RBM17P2-201ENST00000616397 1405 ntBASIC17.38■□□□□ 0.37
NKX3-1Q99801 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms