Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.84■□□□□ 0.93
CCHCR1Q8TD31 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCHCR1Q8TD31 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCHCR1Q8TD31 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.84■□□□□ 0.93
CCHCR1Q8TD31 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCHCR1Q8TD31 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCHCR1Q8TD31 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCHCR1Q8TD31 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
CCHCR1Q8TD31 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCHCR1Q8TD31 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.83■□□□□ 0.93
CCHCR1Q8TD31 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCHCR1Q8TD31 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCHCR1Q8TD31 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.83■□□□□ 0.93
CCHCR1Q8TD31 RBM17P2-201ENST00000616397 1405 ntBASIC20.83■□□□□ 0.93
CCHCR1Q8TD31 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCHCR1Q8TD31 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCHCR1Q8TD31 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCHCR1Q8TD31 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCHCR1Q8TD31 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCHCR1Q8TD31 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 AC091799.1-201ENST00000422823 811 ntBASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 DUX4L16-201ENST00000555130 1264 ntBASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 AC231657.2-201ENST00000624556 255 ntBASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 AC013268.1-206ENST00000638368 961 ntBASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 AC112229.1-201ENST00000639295 961 ntBASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 BX323043.1-201ENST00000641006 1765 ntBASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCHCR1Q8TD31 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CCHCR1Q8TD31 DPP3P2-201ENST00000416030 1696 ntBASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 TMEM179-206ENST00000616017 1645 ntBASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCHCR1Q8TD31 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 AC007322.1-201ENST00000426983 750 ntBASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCHCR1Q8TD31 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms