Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
FOXA1P55317 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
FOXA1P55317 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
FOXA1P55317 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
FOXA1P55317 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
FOXA1P55317 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
FOXA1P55317 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
FOXA1P55317 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.38■□□□□ 0.69
FOXA1P55317 KRT18P11-201ENST00000435214 1283 ntBASIC19.38■□□□□ 0.69
FOXA1P55317 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.38■□□□□ 0.69
FOXA1P55317 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.38■□□□□ 0.69
FOXA1P55317 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
FOXA1P55317 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
FOXA1P55317 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.38■□□□□ 0.69
FOXA1P55317 DUX4L16-201ENST00000555130 1264 ntBASIC19.38■□□□□ 0.69
FOXA1P55317 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.38■□□□□ 0.69
FOXA1P55317 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
FOXA1P55317 AC011767.1-201ENST00000617410 1153 ntBASIC19.38■□□□□ 0.69
FOXA1P55317 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
FOXA1P55317 RNF165-205ENST00000588679 2904 ntBASIC19.38■□□□□ 0.69
FOXA1P55317 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
FOXA1P55317 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.37■□□□□ 0.69
FOXA1P55317 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.37■□□□□ 0.69
FOXA1P55317 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.37■□□□□ 0.69
FOXA1P55317 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
FOXA1P55317 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 AC068338.2-201ENST00000563278 1430 ntBASIC19.37■□□□□ 0.69
FOXA1P55317 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
FOXA1P55317 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.37■□□□□ 0.69
FOXA1P55317 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 RARRES2P4-201ENST00000514074 484 ntBASIC19.37■□□□□ 0.69
FOXA1P55317 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.37■□□□□ 0.69
FOXA1P55317 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.37■□□□□ 0.69
FOXA1P55317 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.37■□□□□ 0.69
FOXA1P55317 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.37■□□□□ 0.69
FOXA1P55317 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
FOXA1P55317 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA1P55317 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA1P55317 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.36■□□□□ 0.69
FOXA1P55317 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.36■□□□□ 0.69
FOXA1P55317 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA1P55317 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
FOXA1P55317 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
FOXA1P55317 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA1P55317 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA1P55317 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA1P55317 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA1P55317 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.36■□□□□ 0.69
FOXA1P55317 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.36■□□□□ 0.69
FOXA1P55317 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.36■□□□□ 0.69
FOXA1P55317 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.36■□□□□ 0.69
FOXA1P55317 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA1P55317 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA1P55317 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.36■□□□□ 0.69
FOXA1P55317 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA1P55317 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.36■□□□□ 0.69
FOXA1P55317 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.36■□□□□ 0.69
FOXA1P55317 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
FOXA1P55317 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.36■□□□□ 0.69
FOXA1P55317 AC093484.2-201ENST00000580996 2166 ntBASIC19.36■□□□□ 0.69
FOXA1P55317 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
FOXA1P55317 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA1P55317 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA1P55317 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.35■□□□□ 0.69
FOXA1P55317 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA1P55317 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA1P55317 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.35■□□□□ 0.69
FOXA1P55317 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
FOXA1P55317 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA1P55317 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA1P55317 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.35■□□□□ 0.69
FOXA1P55317 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA1P55317 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA1P55317 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA1P55317 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
FOXA1P55317 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA1P55317 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.35■□□□□ 0.69
FOXA1P55317 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA1P55317 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.35■□□□□ 0.69
FOXA1P55317 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.35■□□□□ 0.69
FOXA1P55317 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
FOXA1P55317 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.35■□□□□ 0.69
FOXA1P55317 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA1P55317 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.34■□□□□ 0.69
FOXA1P55317 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
FOXA1P55317 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
FOXA1P55317 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
FOXA1P55317 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
FOXA1P55317 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms