Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC27.92■■■□□ 2.06
MSH6P52701 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC27.92■■■□□ 2.06
MSH6P52701 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC27.92■■■□□ 2.06
MSH6P52701 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC27.92■■■□□ 2.06
MSH6P52701 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC27.92■■■□□ 2.06
MSH6P52701 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC27.92■■■□□ 2.06
MSH6P52701 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC27.92■■■□□ 2.06
MSH6P52701 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
MSH6P52701 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
MSH6P52701 AC127496.7-201ENST00000625110 1798 ntBASIC27.92■■■□□ 2.06
MSH6P52701 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
MSH6P52701 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC27.91■■■□□ 2.06
MSH6P52701 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC27.91■■■□□ 2.06
MSH6P52701 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC27.91■■■□□ 2.06
MSH6P52701 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC27.91■■■□□ 2.06
MSH6P52701 FAM86EP-206ENST00000510506 987 ntBASIC27.91■■■□□ 2.06
MSH6P52701 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC27.91■■■□□ 2.06
MSH6P52701 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC27.91■■■□□ 2.06
MSH6P52701 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
MSH6P52701 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC27.9■■■□□ 2.06
MSH6P52701 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC27.9■■■□□ 2.06
MSH6P52701 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
MSH6P52701 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
MSH6P52701 IER3-202ENST00000376377 1350 ntBASIC27.9■■■□□ 2.06
MSH6P52701 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC27.9■■■□□ 2.06
MSH6P52701 TSPY5P-201ENST00000426936 936 ntBASIC27.9■■■□□ 2.06
MSH6P52701 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
MSH6P52701 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
MSH6P52701 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC27.9■■■□□ 2.06
MSH6P52701 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC27.9■■■□□ 2.06
MSH6P52701 C1orf229-201ENST00000623686 2258 ntBASIC27.9■■■□□ 2.06
MSH6P52701 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC27.9■■■□□ 2.06
MSH6P52701 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC27.9■■■□□ 2.06
MSH6P52701 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
MSH6P52701 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC27.9■■■□□ 2.06
MSH6P52701 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
MSH6P52701 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC27.89■■■□□ 2.06
MSH6P52701 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
MSH6P52701 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC27.89■■■□□ 2.06
MSH6P52701 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
MSH6P52701 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC27.89■■■□□ 2.06
MSH6P52701 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC27.89■■■□□ 2.06
MSH6P52701 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC27.89■■■□□ 2.06
MSH6P52701 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC27.89■■■□□ 2.06
MSH6P52701 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC27.89■■■□□ 2.06
MSH6P52701 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
MSH6P52701 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC27.89■■■□□ 2.06
MSH6P52701 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC27.89■■■□□ 2.06
MSH6P52701 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC27.89■■■□□ 2.05
MSH6P52701 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
MSH6P52701 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
MSH6P52701 HCG4P8-203ENST00000443049 980 ntBASIC27.88■■■□□ 2.05
MSH6P52701 AC011506.1-201ENST00000474329 610 ntBASIC27.88■■■□□ 2.05
MSH6P52701 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC27.88■■■□□ 2.05
MSH6P52701 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC27.88■■■□□ 2.05
MSH6P52701 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC27.88■■■□□ 2.05
MSH6P52701 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
MSH6P52701 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC27.88■■■□□ 2.05
MSH6P52701 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC27.88■■■□□ 2.05
MSH6P52701 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC27.88■■■□□ 2.05
MSH6P52701 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
MSH6P52701 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
MSH6P52701 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC27.87■■■□□ 2.05
MSH6P52701 CLEC4GP1-201ENST00000596555 870 ntBASIC27.87■■■□□ 2.05
MSH6P52701 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC27.87■■■□□ 2.05
MSH6P52701 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC27.87■■■□□ 2.05
MSH6P52701 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
MSH6P52701 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC27.87■■■□□ 2.05
MSH6P52701 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC27.87■■■□□ 2.05
MSH6P52701 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC27.87■■■□□ 2.05
MSH6P52701 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC27.87■■■□□ 2.05
MSH6P52701 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC27.87■■■□□ 2.05
MSH6P52701 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC27.87■■■□□ 2.05
MSH6P52701 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
MSH6P52701 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
MSH6P52701 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC27.86■■■□□ 2.05
MSH6P52701 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
MSH6P52701 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC27.86■■■□□ 2.05
MSH6P52701 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC27.86■■■□□ 2.05
MSH6P52701 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
MSH6P52701 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
MSH6P52701 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
MSH6P52701 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC27.86■■■□□ 2.05
MSH6P52701 GPX4-207ENST00000589115 812 ntTSL 2 BASIC27.86■■■□□ 2.05
MSH6P52701 CLN6-214ENST00000636314 442 ntTSL 3 BASIC27.86■■■□□ 2.05
MSH6P52701 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC27.86■■■□□ 2.05
MSH6P52701 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
MSH6P52701 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC27.85■■■□□ 2.05
MSH6P52701 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
MSH6P52701 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
MSH6P52701 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
MSH6P52701 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
MSH6P52701 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
MSH6P52701 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
MSH6P52701 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
MSH6P52701 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC27.85■■■□□ 2.05
MSH6P52701 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC27.85■■■□□ 2.05
MSH6P52701 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC27.85■■■□□ 2.05
MSH6P52701 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
MSH6P52701 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC27.85■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms