Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 KRT17P2-201ENST00000300992 1314 ntBASIC16.96■□□□□ 0.3
USF1P22415 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
USF1P22415 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
USF1P22415 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
USF1P22415 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC16.95■□□□□ 0.3
USF1P22415 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.95■□□□□ 0.3
USF1P22415 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC16.95■□□□□ 0.3
USF1P22415 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
USF1P22415 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
USF1P22415 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC16.95■□□□□ 0.3
USF1P22415 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC16.95■□□□□ 0.3
USF1P22415 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC16.95■□□□□ 0.3
USF1P22415 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
USF1P22415 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
USF1P22415 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
USF1P22415 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.94■□□□□ 0.3
USF1P22415 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF1P22415 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.94■□□□□ 0.3
USF1P22415 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF1P22415 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
USF1P22415 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC16.94■□□□□ 0.3
USF1P22415 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF1P22415 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC16.94■□□□□ 0.3
USF1P22415 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF1P22415 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16.94■□□□□ 0.3
USF1P22415 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
USF1P22415 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF1P22415 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
USF1P22415 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
USF1P22415 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
USF1P22415 RER1-204ENST00000378518 522 ntTSL 3 BASIC16.94■□□□□ 0.3
USF1P22415 ECEL1P3-201ENST00000427961 737 ntBASIC16.94■□□□□ 0.3
USF1P22415 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USF1P22415 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC16.94■□□□□ 0.3
USF1P22415 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.94■□□□□ 0.3
USF1P22415 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC16.94■□□□□ 0.3
USF1P22415 AC110285.5-201ENST00000611501 352 ntBASIC16.94■□□□□ 0.3
USF1P22415 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
USF1P22415 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF1P22415 AF106564.1-201ENST00000607058 2553 ntBASIC16.94■□□□□ 0.3
USF1P22415 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC16.94■□□□□ 0.3
USF1P22415 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USF1P22415 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USF1P22415 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
USF1P22415 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USF1P22415 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USF1P22415 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.94■□□□□ 0.3
USF1P22415 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF1P22415 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF1P22415 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USF1P22415 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF1P22415 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
USF1P22415 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF1P22415 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF1P22415 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USF1P22415 SERF2-207ENST00000409614 582 ntTSL 2 BASIC16.93■□□□□ 0.3
USF1P22415 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
USF1P22415 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USF1P22415 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.93■□□□□ 0.3
USF1P22415 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
USF1P22415 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.93■□□□□ 0.3
USF1P22415 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USF1P22415 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.93■□□□□ 0.3
USF1P22415 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USF1P22415 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USF1P22415 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
USF1P22415 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC16.92■□□□□ 0.3
USF1P22415 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
USF1P22415 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USF1P22415 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USF1P22415 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.92■□□□□ 0.3
USF1P22415 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
USF1P22415 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
USF1P22415 KRASP1-201ENST00000407852 552 ntBASIC16.92■□□□□ 0.3
USF1P22415 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
USF1P22415 AC211429.1-201ENST00000415277 523 ntBASIC16.92■□□□□ 0.3
USF1P22415 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USF1P22415 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USF1P22415 TK2-204ENST00000525974 1178 ntTSL 2 BASIC16.92■□□□□ 0.3
USF1P22415 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
USF1P22415 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USF1P22415 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC16.92■□□□□ 0.3
USF1P22415 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
USF1P22415 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms