Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
VIMP08670 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
VIMP08670 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.09■□□□□ 0.81
VIMP08670 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.09■□□□□ 0.81
VIMP08670 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.09■□□□□ 0.81
VIMP08670 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.08■□□□□ 0.81
VIMP08670 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VIMP08670 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
VIMP08670 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.08■□□□□ 0.81
VIMP08670 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
VIMP08670 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.08■□□□□ 0.81
VIMP08670 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VIMP08670 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.08■□□□□ 0.81
VIMP08670 UNC93B8-201ENST00000511903 705 ntBASIC20.08■□□□□ 0.81
VIMP08670 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
VIMP08670 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
VIMP08670 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.08■□□□□ 0.8
VIMP08670 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
VIMP08670 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VIMP08670 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
VIMP08670 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.07■□□□□ 0.8
VIMP08670 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.07■□□□□ 0.8
VIMP08670 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
VIMP08670 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
VIMP08670 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.07■□□□□ 0.8
VIMP08670 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.07■□□□□ 0.8
VIMP08670 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.07■□□□□ 0.8
VIMP08670 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC20.07■□□□□ 0.8
VIMP08670 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
VIMP08670 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VIMP08670 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
VIMP08670 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.06■□□□□ 0.8
VIMP08670 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.06■□□□□ 0.8
VIMP08670 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.06■□□□□ 0.8
VIMP08670 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
VIMP08670 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
VIMP08670 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 AC061975.6-201ENST00000579045 1553 ntBASIC20.06■□□□□ 0.8
VIMP08670 MIR2861-201ENST00000636310 90 ntBASIC20.06■□□□□ 0.8
VIMP08670 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
VIMP08670 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.06■□□□□ 0.8
VIMP08670 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.06■□□□□ 0.8
VIMP08670 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VIMP08670 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
VIMP08670 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.05■□□□□ 0.8
VIMP08670 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VIMP08670 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VIMP08670 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
VIMP08670 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC20.05■□□□□ 0.8
VIMP08670 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
VIMP08670 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
VIMP08670 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VIMP08670 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VIMP08670 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VIMP08670 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
VIMP08670 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VIMP08670 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VIMP08670 KRT16P3-201ENST00000439127 1283 ntBASIC20.05■□□□□ 0.8
VIMP08670 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
VIMP08670 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VIMP08670 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.05■□□□□ 0.8
VIMP08670 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.05■□□□□ 0.8
VIMP08670 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VIMP08670 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.05■□□□□ 0.8
VIMP08670 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VIMP08670 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
VIMP08670 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
VIMP08670 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
VIMP08670 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VIMP08670 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
VIMP08670 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
VIMP08670 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.05■□□□□ 0.8
VIMP08670 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.04■□□□□ 0.8
VIMP08670 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms