Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 KRT18P16-201ENST00000510337 1294 ntBASIC12.61□□□□□ -0.39
APOBP04114 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC12.61□□□□□ -0.39
APOBP04114 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
APOBP04114 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC12.6□□□□□ -0.39
APOBP04114 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC12.6□□□□□ -0.39
APOBP04114 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC12.6□□□□□ -0.39
APOBP04114 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
APOBP04114 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 AL671883.3-201ENST00000603274 991 ntBASIC12.6□□□□□ -0.39
APOBP04114 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC12.6□□□□□ -0.39
APOBP04114 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
APOBP04114 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC12.6□□□□□ -0.39
APOBP04114 AC004263.2-201ENST00000617183 678 ntBASIC12.6□□□□□ -0.39
APOBP04114 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
APOBP04114 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC12.6□□□□□ -0.39
APOBP04114 PVRIG2P-201ENST00000435460 978 ntBASIC12.6□□□□□ -0.39
APOBP04114 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC12.6□□□□□ -0.39
APOBP04114 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
APOBP04114 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC12.6□□□□□ -0.39
APOBP04114 FSCN1P1-201ENST00000568912 1481 ntBASIC12.59□□□□□ -0.39
APOBP04114 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC12.59□□□□□ -0.39
APOBP04114 AC011558.1-201ENST00000623459 338 ntBASIC12.59□□□□□ -0.39
APOBP04114 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
APOBP04114 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
APOBP04114 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
APOBP04114 AP002982.1-201ENST00000492365 877 ntBASIC12.59□□□□□ -0.39
APOBP04114 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC12.59□□□□□ -0.39
APOBP04114 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC12.59□□□□□ -0.39
APOBP04114 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC12.59□□□□□ -0.39
APOBP04114 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC12.59□□□□□ -0.39
APOBP04114 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 PGM5P4-201ENST00000421970 445 ntBASIC12.59□□□□□ -0.39
APOBP04114 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC12.59□□□□□ -0.39
APOBP04114 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
APOBP04114 GPALPP1-207ENST00000611650 899 ntBASIC12.59□□□□□ -0.39
APOBP04114 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC12.59□□□□□ -0.39
APOBP04114 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
APOBP04114 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.39
APOBP04114 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
APOBP04114 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
APOBP04114 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
APOBP04114 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC12.58□□□□□ -0.4
APOBP04114 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC12.58□□□□□ -0.4
APOBP04114 AC116407.4-201ENST00000623319 1061 ntBASIC12.58□□□□□ -0.4
APOBP04114 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
APOBP04114 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
APOBP04114 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
APOBP04114 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
APOBP04114 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
APOBP04114 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
APOBP04114 CD70-202ENST00000423145 881 ntTSL 2 BASIC12.58□□□□□ -0.4
APOBP04114 KRT18P38-201ENST00000449496 1282 ntBASIC12.58□□□□□ -0.4
APOBP04114 PP7080-204ENST00000510714 601 ntTSL 3 BASIC12.58□□□□□ -0.4
APOBP04114 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC12.58□□□□□ -0.4
APOBP04114 PNN-205ENST00000556530 601 ntTSL 2 BASIC12.58□□□□□ -0.4
APOBP04114 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
APOBP04114 CLN6-221ENST00000637494 765 ntTSL 5 BASIC12.58□□□□□ -0.4
APOBP04114 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
APOBP04114 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
APOBP04114 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
APOBP04114 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC12.58□□□□□ -0.4
APOBP04114 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC12.58□□□□□ -0.4
APOBP04114 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
APOBP04114 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC12.58□□□□□ -0.4
APOBP04114 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
APOBP04114 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
APOBP04114 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
APOBP04114 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms