Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 CYBA-206ENST00000566229 405 ntTSL 312.41□□□□□ -0.427e-7■■□□□ 14.2
SMNDC1O75940 CYBA-207ENST00000566534 1006 ntTSL 512.41□□□□□ -0.427e-7■■□□□ 14.2
SMNDC1O75940 CYBA-209ENST00000568278 439 ntTSL 511.73□□□□□ -0.537e-7■■□□□ 14.2
SMNDC1O75940 PDXK-209ENST00000467908 7194 ntTSL 3 BASIC11.56□□□□□ -0.567e-7■■□□□ 14.2
SMNDC1O75940 GET4-204ENST00000426056 502 ntTSL 49.92□□□□□ -0.827e-7■■□□□ 14.2
SMNDC1O75940 AP1G2-222ENST00000556152 673 ntTSL 39.4□□□□□ -0.97e-7■■□□□ 14.2
SMNDC1O75940 AP1G2-230ENST00000557162 561 ntTSL 49.37□□□□□ -0.915e-10■■□□□ 14.2
SMNDC1O75940 AP1G2-215ENST00000554977 569 ntTSL 48.3□□□□□ -1.087e-7■■□□□ 14.2
SMNDC1O75940 FAM178B-205ENST00000494172 592 ntTSL 316.06■□□□□ 0.161e-6■■□□□ 14.2
SMNDC1O75940 ITPA-204ENST00000460550 967 ntTSL 215.1■□□□□ 0.011e-7■■□□□ 14.1
SMNDC1O75940 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.77□□□□□ -0.051e-7■■□□□ 14.1
SMNDC1O75940 ITPA-208ENST00000483354 1028 ntTSL 314.77□□□□□ -0.051e-7■■□□□ 14.1
SMNDC1O75940 ITPA-209ENST00000490838 977 ntTSL 214.42□□□□□ -0.11e-7■■□□□ 14.1
SMNDC1O75940 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.281e-7■■□□□ 14.1
SMNDC1O75940 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.31□□□□□ -0.281e-7■■□□□ 14.1
SMNDC1O75940 HIF1A-206ENST00000553999 616 ntTSL 418.61■□□□□ 0.573e-7■■□□□ 14.1
SMNDC1O75940 HIF1A-211ENST00000557446 559 ntTSL 517.69■□□□□ 0.423e-7■■□□□ 14.1
SMNDC1O75940 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.343e-7■■□□□ 14.1
SMNDC1O75940 PRC1-207ENST00000555745 582 ntTSL 316.78■□□□□ 0.283e-7■■□□□ 14.1
SMNDC1O75940 HNRNPK-206ENST00000457156 1283 ntTSL 516.26■□□□□ 0.193e-7■■□□□ 14.1
SMNDC1O75940 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.113e-7■■□□□ 14.1
SMNDC1O75940 HIST1H2BN-202ENST00000449538 715 ntTSL 1 (best)15.66■□□□□ 0.13e-13■■□□□ 14.1
SMNDC1O75940 PRC1-213ENST00000557905 571 ntTSL 415.47■□□□□ 0.073e-7■■□□□ 14.1
SMNDC1O75940 AC131009.4-201ENST00000624048 1740 ntBASIC14.89□□□□□ -0.032e-10■■□□□ 14.1
SMNDC1O75940 PRC1-215ENST00000559811 414 ntTSL 314.35□□□□□ -0.113e-7■■□□□ 14.1
SMNDC1O75940 PRC1-212ENST00000557763 933 ntTSL 514.32□□□□□ -0.123e-7■■□□□ 14.1
SMNDC1O75940 PRC1-203ENST00000417173 1215 ntTSL 213.74□□□□□ -0.213e-7■■□□□ 14.1
SMNDC1O75940 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.41□□□□□ -0.263e-7■■□□□ 14.1
SMNDC1O75940 PRC1-205ENST00000553494 717 ntTSL 313.27□□□□□ -0.293e-7■■□□□ 14.1
SMNDC1O75940 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.22□□□□□ -0.293e-7■■□□□ 14.1
SMNDC1O75940 PRC1-218ENST00000560605 576 ntTSL 412.06□□□□□ -0.483e-7■■□□□ 14.1
SMNDC1O75940 PRC1-208ENST00000555791 660 ntTSL 411.7□□□□□ -0.543e-7■■□□□ 14.1
SMNDC1O75940 PRC1-201ENST00000361188 4087 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.593e-7■■□□□ 14.1
SMNDC1O75940 SCMH1-207ENST00000372597 3252 ntTSL 1 (best) BASIC11.15□□□□□ -0.633e-7■■□□□ 14.1
SMNDC1O75940 LINC01667-201ENST00000623554 1137 ntTSL 5 BASIC11.14□□□□□ -0.633e-7■■□□□ 14.1
SMNDC1O75940 HIST1H2BN-201ENST00000396980 432 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.653e-13■■□□□ 14.1
SMNDC1O75940 SCMH1-204ENST00000361705 3115 ntTSL 5 BASIC10.87□□□□□ -0.673e-7■■□□□ 14.1
SMNDC1O75940 SCMH1-208ENST00000397171 3186 ntTSL 5 BASIC10.85□□□□□ -0.673e-7■■□□□ 14.1
SMNDC1O75940 PRC1-202ENST00000394249 3034 ntTSL 1 (best) BASIC10.77□□□□□ -0.693e-7■■□□□ 14.1
SMNDC1O75940 SCMH1-206ENST00000372596 3323 ntTSL 1 (best) BASIC10.67□□□□□ -0.73e-7■■□□□ 14.1
SMNDC1O75940 SCMH1-202ENST00000337495 3108 ntTSL 2 BASIC10.65□□□□□ -0.73e-7■■□□□ 14.1
SMNDC1O75940 HIF1A-202ENST00000337138 3919 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.723e-7■■□□□ 14.1
SMNDC1O75940 HIF1A-203ENST00000394997 3922 ntAPPRIS ALT1 TSL 1 (best) BASIC10.53□□□□□ -0.723e-7■■□□□ 14.1
SMNDC1O75940 SCMH1-203ENST00000361191 2906 ntTSL 5 BASIC10.23□□□□□ -0.773e-7■■□□□ 14.1
SMNDC1O75940 SCMH1-205ENST00000372595 3231 ntTSL 1 (best) BASIC9.63□□□□□ -0.873e-7■■□□□ 14.1
SMNDC1O75940 HNRNPK-205ENST00000376281 2928 ntAPPRIS P4 TSL 1 (best) BASIC9.31□□□□□ -0.923e-7■■□□□ 14.1
SMNDC1O75940 POGZ-205ENST00000409503 4813 ntAPPRIS ALT1 TSL 2 BASIC8.82□□□□□ -13e-7■■□□□ 14.1
SMNDC1O75940 HIF1A-210ENST00000557206 767 ntTSL 38.74□□□□□ -1.013e-7■■□□□ 14.1
SMNDC1O75940 SCMH1-210ENST00000402904 3204 ntTSL 5 BASIC8.64□□□□□ -1.033e-7■■□□□ 14.1
SMNDC1O75940 POGZ-201ENST00000271715 6626 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.043e-7■■□□□ 14.1
SMNDC1O75940 HIST1H2BN-203ENST00000606613 4137 ntTSL 1 (best) BASIC8.39□□□□□ -1.073e-13■■□□□ 14.1
SMNDC1O75940 POGZ-203ENST00000368863 6054 ntTSL 1 (best) BASIC8.22□□□□□ -1.093e-7■■□□□ 14.1
SMNDC1O75940 HNRNPK-201ENST00000351839 2652 ntAPPRIS ALT1 TSL 1 (best) BASIC7.65□□□□□ -1.183e-7■■□□□ 14.1
SMNDC1O75940 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC7.48□□□□□ -1.213e-7■■□□□ 14.1
SMNDC1O75940 DMXL2-211ENST00000560211 699 ntTSL 37.46□□□□□ -1.222e-10■■□□□ 14.1
SMNDC1O75940 DMXL2-208ENST00000559498 571 ntTSL 57.16□□□□□ -1.262e-10■■□□□ 14.1
SMNDC1O75940 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC7.05□□□□□ -1.283e-7■■□□□ 14.1
SMNDC1O75940 HNRNPK-209ENST00000483135 900 ntTSL 26.9□□□□□ -1.33e-7■■□□□ 14.1
SMNDC1O75940 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.34□□□□□ -1.393e-7■■□□□ 14.1
SMNDC1O75940 POGZ-217ENST00000529669 949 ntTSL 56.33□□□□□ -1.43e-7■■□□□ 14.1
SMNDC1O75940 POGZ-202ENST00000358476 6459 ntTSL 26.32□□□□□ -1.43e-7■■□□□ 14.1
SMNDC1O75940 HNRNPK-207ENST00000472778 822 ntTSL 36.08□□□□□ -1.443e-7■■□□□ 14.1
SMNDC1O75940 DMXL2-207ENST00000559062 569 ntTSL 35.46□□□□□ -1.542e-10■■□□□ 14.1
SMNDC1O75940 DMXL2-204ENST00000558124 578 ntTSL 34.65□□□□□ -1.672e-10■■□□□ 14.1
SMNDC1O75940 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.86□□□□□ -1.953e-7■■□□□ 14.1
SMNDC1O75940 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.59□□□□□ -23e-7■■□□□ 14.1
SMNDC1O75940 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.56□□□□□ -2.163e-7■■□□□ 14.1
SMNDC1O75940 HDAC7-220ENST00000471235 1012 ntTSL 217.6■□□□□ 0.413e-6■■□□□ 14.1
SMNDC1O75940 ASPSCR1-205ENST00000578236 3277 ntTSL 214.46□□□□□ -0.093e-7■■□□□ 14.1
SMNDC1O75940 AC124312.3-201ENST00000567527 1236 ntBASIC10.09□□□□□ -0.795e-7■■□□□ 14.1
SMNDC1O75940 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.361e-6■■□□□ 14
SMNDC1O75940 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.331e-6■■□□□ 14
SMNDC1O75940 SREBF1-206ENST00000423161 1058 ntTSL 316.69■□□□□ 0.263e-7■■□□□ 14
SMNDC1O75940 SREBF1-222ENST00000583732 580 ntTSL 413.72□□□□□ -0.213e-7■■□□□ 14
SMNDC1O75940 SREBF1-217ENST00000577897 536 ntTSL 412.95□□□□□ -0.343e-7■■□□□ 14
SMNDC1O75940 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.239e-7■■□□□ 14
SMNDC1O75940 SRRM2-218ENST00000574331 1759 ntTSL 217.1■□□□□ 0.339e-24■■□□□ 14
SMNDC1O75940 SRRM2-221ENST00000574866 638 ntTSL 315.95■□□□□ 0.149e-24■■□□□ 14
SMNDC1O75940 FGFR3-209ENST00000507588 336 ntTSL 1 (best)16.81■□□□□ 0.281e-9■■□□□ 14
SMNDC1O75940 RHOT2-202ENST00000561711 644 ntTSL 319.94■□□□□ 0.781e-9■■□□□ 14
SMNDC1O75940 WDR6-216ENST00000489684 1155 ntTSL 214.67□□□□□ -0.061e-7■■□□□ 14
SMNDC1O75940 RHOT2-213ENST00000565004 1014 ntTSL 514.3□□□□□ -0.121e-9■■□□□ 14
SMNDC1O75940 HMBS-210ENST00000539045 845 ntTSL 29.03□□□□□ -0.961e-9■■□□□ 14
SMNDC1O75940 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.78■■□□□ 1.44e-8■■□□□ 14
SMNDC1O75940 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.86■□□□□ 0.934e-8■■□□□ 14
SMNDC1O75940 CLASP1-213ENST00000485112 869 ntTSL 520.33■□□□□ 0.854e-8■■□□□ 14
SMNDC1O75940 CCNL2-216ENST00000488340 1598 ntTSL 219.52■□□□□ 0.719e-21■■□□□ 14
SMNDC1O75940 CCNL2-213ENST00000481223 2815 ntTSL 219.43■□□□□ 0.79e-21■■□□□ 14
SMNDC1O75940 RBM14-RBM4-202ENST00000421355 2034 ntTSL 218.95■□□□□ 0.624e-8■■□□□ 14
SMNDC1O75940 RBM14-207ENST00000461478 693 ntTSL 218.94■□□□□ 0.624e-8■■□□□ 14
SMNDC1O75940 CCNL2-205ENST00000425598 661 ntTSL 518.8■□□□□ 0.64e-8■■□□□ 14
SMNDC1O75940 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.539e-21■■□□□ 14
SMNDC1O75940 RBM14-206ENST00000460762 459 ntTSL 218.28■□□□□ 0.524e-8■■□□□ 14
SMNDC1O75940 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.494e-8■■□□□ 14
SMNDC1O75940 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.34e-8■■□□□ 14
SMNDC1O75940 RBM14-209ENST00000512283 567 ntTSL 416.51■□□□□ 0.234e-8■■□□□ 14
SMNDC1O75940 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.24e-8■■□□□ 14
SMNDC1O75940 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16■□□□□ 0.154e-8■■□□□ 14
SMNDC1O75940 CCNL2-215ENST00000482621 2059 ntTSL 215.53■□□□□ 0.089e-21■■□□□ 14
SMNDC1O75940 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.22■□□□□ 0.034e-8■■□□□ 14
Retrieved 100 of 11,362 protein–RNA pairs in 340.3 ms