Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4BO75351 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
VPS4BO75351 SMG8-203ENST00000578922 2178 ntBASIC19.6■□□□□ 0.73
VPS4BO75351 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.6■□□□□ 0.73
VPS4BO75351 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS4BO75351 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4BO75351 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS4BO75351 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4BO75351 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4BO75351 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4BO75351 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4BO75351 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
VPS4BO75351 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
VPS4BO75351 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
VPS4BO75351 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
VPS4BO75351 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS4BO75351 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4BO75351 AC105036.2-201ENST00000569468 176 ntBASIC19.6■□□□□ 0.73
VPS4BO75351 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.6■□□□□ 0.73
VPS4BO75351 UBE2DNL-204ENST00000602536 740 ntBASIC19.6■□□□□ 0.73
VPS4BO75351 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4BO75351 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS4BO75351 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.59■□□□□ 0.73
VPS4BO75351 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS4BO75351 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4BO75351 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4BO75351 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4BO75351 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4BO75351 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VPS4BO75351 KRT18P20-201ENST00000548986 1279 ntBASIC19.59■□□□□ 0.73
VPS4BO75351 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
VPS4BO75351 AP006294.2-201ENST00000641667 209 ntBASIC19.59■□□□□ 0.73
VPS4BO75351 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4BO75351 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4BO75351 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS4BO75351 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4BO75351 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4BO75351 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS4BO75351 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS4BO75351 KRT8P36-201ENST00000489121 1440 ntBASIC19.59■□□□□ 0.73
VPS4BO75351 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4BO75351 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4BO75351 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS4BO75351 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS4BO75351 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.73
VPS4BO75351 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.58■□□□□ 0.73
VPS4BO75351 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.58■□□□□ 0.73
VPS4BO75351 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS4BO75351 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS4BO75351 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS4BO75351 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS4BO75351 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VPS4BO75351 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS4BO75351 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.58■□□□□ 0.73
VPS4BO75351 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS4BO75351 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.58■□□□□ 0.73
VPS4BO75351 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.58■□□□□ 0.73
VPS4BO75351 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.58■□□□□ 0.72
VPS4BO75351 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4BO75351 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4BO75351 AC243732.1-201ENST00000612648 864 ntBASIC19.58■□□□□ 0.72
VPS4BO75351 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
VPS4BO75351 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4BO75351 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4BO75351 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4BO75351 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4BO75351 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4BO75351 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4BO75351 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VPS4BO75351 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.57■□□□□ 0.72
VPS4BO75351 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS4BO75351 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4BO75351 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VPS4BO75351 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4BO75351 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
VPS4BO75351 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS4BO75351 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
VPS4BO75351 MIR4758-201ENST00000577688 71 ntBASIC19.57■□□□□ 0.72
VPS4BO75351 AP001160.3-201ENST00000601484 763 ntBASIC19.57■□□□□ 0.72
VPS4BO75351 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4BO75351 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS4BO75351 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4BO75351 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4BO75351 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4BO75351 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4BO75351 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS4BO75351 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4BO75351 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS4BO75351 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
VPS4BO75351 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4BO75351 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4BO75351 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS4BO75351 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VPS4BO75351 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4BO75351 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS4BO75351 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS4BO75351 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS4BO75351 RNA5SP413-201ENST00000516373 109 ntBASIC19.56■□□□□ 0.72
VPS4BO75351 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS4BO75351 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms