Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 AP001412.1-201ENST00000608405 714 ntBASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 AL135905.2-201ENST00000584934 1404 ntBASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TM9SF3Q9HD45 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
TM9SF3Q9HD45 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TM9SF3Q9HD45 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.08■□□□□ 0.81
TM9SF3Q9HD45 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.08■□□□□ 0.81
TM9SF3Q9HD45 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.08■□□□□ 0.81
TM9SF3Q9HD45 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.08■□□□□ 0.81
TM9SF3Q9HD45 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.08■□□□□ 0.81
TM9SF3Q9HD45 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TM9SF3Q9HD45 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.08■□□□□ 0.8
TM9SF3Q9HD45 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TM9SF3Q9HD45 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TM9SF3Q9HD45 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
TM9SF3Q9HD45 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
TM9SF3Q9HD45 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
TM9SF3Q9HD45 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TM9SF3Q9HD45 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
TM9SF3Q9HD45 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
TM9SF3Q9HD45 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.08■□□□□ 0.8
TM9SF3Q9HD45 AC073130.3-201ENST00000624389 2278 ntBASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
TM9SF3Q9HD45 FEM1AP4-201ENST00000443167 1987 ntBASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 LINC01023-201ENST00000606054 436 ntBASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TM9SF3Q9HD45 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TM9SF3Q9HD45 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.04■□□□□ 0.8
TM9SF3Q9HD45 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TM9SF3Q9HD45 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
TM9SF3Q9HD45 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.04■□□□□ 0.8
TM9SF3Q9HD45 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms