Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC14.49□□□□□ -0.09
COL7A1Q02388 AP000347.1-202ENST00000435868 847 ntBASIC14.49□□□□□ -0.09
COL7A1Q02388 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL7A1Q02388 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC14.49□□□□□ -0.09
COL7A1Q02388 B3GAT3P1-201ENST00000471720 806 ntBASIC14.49□□□□□ -0.09
COL7A1Q02388 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL7A1Q02388 LINC01238-205ENST00000567549 1107 ntBASIC14.49□□□□□ -0.09
COL7A1Q02388 CLN6-221ENST00000637494 765 ntTSL 5 BASIC14.49□□□□□ -0.09
COL7A1Q02388 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC14.49□□□□□ -0.09
COL7A1Q02388 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL7A1Q02388 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL7A1Q02388 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC14.48□□□□□ -0.09
COL7A1Q02388 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
COL7A1Q02388 AC023511.2-201ENST00000618803 211 ntBASIC14.48□□□□□ -0.09
COL7A1Q02388 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC14.48□□□□□ -0.09
COL7A1Q02388 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC14.48□□□□□ -0.09
COL7A1Q02388 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC14.48□□□□□ -0.09
COL7A1Q02388 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC14.48□□□□□ -0.09
COL7A1Q02388 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL7A1Q02388 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC14.48□□□□□ -0.09
COL7A1Q02388 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC14.48□□□□□ -0.09
COL7A1Q02388 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL7A1Q02388 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL7A1Q02388 AC023632.3-201ENST00000521633 145 ntBASIC14.48□□□□□ -0.09
COL7A1Q02388 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
COL7A1Q02388 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC14.48□□□□□ -0.09
COL7A1Q02388 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
COL7A1Q02388 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL7A1Q02388 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC14.47□□□□□ -0.09
COL7A1Q02388 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL7A1Q02388 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.09
COL7A1Q02388 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL7A1Q02388 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
COL7A1Q02388 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC14.47□□□□□ -0.09
COL7A1Q02388 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL7A1Q02388 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL7A1Q02388 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC14.47□□□□□ -0.09
COL7A1Q02388 RNF152P1-201ENST00000397754 604 ntBASIC14.47□□□□□ -0.09
COL7A1Q02388 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL7A1Q02388 PP7080-204ENST00000510714 601 ntTSL 3 BASIC14.47□□□□□ -0.09
COL7A1Q02388 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL7A1Q02388 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC14.47□□□□□ -0.09
COL7A1Q02388 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL7A1Q02388 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC14.47□□□□□ -0.09
COL7A1Q02388 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL7A1Q02388 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
COL7A1Q02388 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL7A1Q02388 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL7A1Q02388 FAM86EP-206ENST00000510506 987 ntBASIC14.47□□□□□ -0.09
COL7A1Q02388 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.47□□□□□ -0.09
COL7A1Q02388 CR392000.1-201ENST00000624770 1228 ntBASIC14.47□□□□□ -0.09
COL7A1Q02388 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
COL7A1Q02388 AC005332.1-201ENST00000577698 1310 ntBASIC14.47□□□□□ -0.09
COL7A1Q02388 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
COL7A1Q02388 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL7A1Q02388 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL7A1Q02388 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL7A1Q02388 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC14.46□□□□□ -0.09
COL7A1Q02388 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL7A1Q02388 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL7A1Q02388 IPPK-202ENST00000375522 882 ntTSL 3 BASIC14.46□□□□□ -0.09
COL7A1Q02388 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC14.46□□□□□ -0.09
COL7A1Q02388 TSPY5P-201ENST00000426936 936 ntBASIC14.46□□□□□ -0.09
COL7A1Q02388 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL7A1Q02388 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.46□□□□□ -0.09
COL7A1Q02388 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC14.46□□□□□ -0.09
COL7A1Q02388 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC14.46□□□□□ -0.09
COL7A1Q02388 AC093458.2-201ENST00000623150 629 ntBASIC14.46□□□□□ -0.09
COL7A1Q02388 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL7A1Q02388 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC14.46□□□□□ -0.09
COL7A1Q02388 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL7A1Q02388 KRT8P10-201ENST00000450021 1447 ntBASIC14.46□□□□□ -0.09
COL7A1Q02388 CASK-201ENST00000378154 2494 ntTSL 5 BASIC14.46□□□□□ -0.09
COL7A1Q02388 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL7A1Q02388 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC14.46□□□□□ -0.09
COL7A1Q02388 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC14.46□□□□□ -0.09
COL7A1Q02388 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
COL7A1Q02388 EGLN1P1-201ENST00000531623 762 ntBASIC14.46□□□□□ -0.09
COL7A1Q02388 NDUFV2-AS1-203ENST00000608008 779 ntBASIC14.46□□□□□ -0.09
COL7A1Q02388 AC011558.1-201ENST00000623459 338 ntBASIC14.46□□□□□ -0.09
COL7A1Q02388 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL7A1Q02388 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL7A1Q02388 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
COL7A1Q02388 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC14.46□□□□□ -0.1
COL7A1Q02388 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC14.46□□□□□ -0.1
COL7A1Q02388 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
COL7A1Q02388 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC14.45□□□□□ -0.1
COL7A1Q02388 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
COL7A1Q02388 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL7A1Q02388 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
COL7A1Q02388 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC14.45□□□□□ -0.1
COL7A1Q02388 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
COL7A1Q02388 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL7A1Q02388 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL7A1Q02388 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL7A1Q02388 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC14.45□□□□□ -0.1
COL7A1Q02388 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL7A1Q02388 DGCR10-201ENST00000609839 495 ntBASIC14.45□□□□□ -0.1
COL7A1Q02388 AC130371.2-201ENST00000619443 611 ntBASIC14.45□□□□□ -0.1
COL7A1Q02388 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms