Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX3P41225 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.85■□□□□ 0.61
SOX3P41225 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX3P41225 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.85■□□□□ 0.61
SOX3P41225 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX3P41225 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.85■□□□□ 0.61
SOX3P41225 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.85■□□□□ 0.61
SOX3P41225 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX3P41225 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX3P41225 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
SOX3P41225 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.84■□□□□ 0.61
SOX3P41225 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.84■□□□□ 0.61
SOX3P41225 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 AC087633.2-202ENST00000565166 1439 ntBASIC18.84■□□□□ 0.61
SOX3P41225 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.84■□□□□ 0.61
SOX3P41225 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SOX3P41225 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
SOX3P41225 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SOX3P41225 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
SOX3P41225 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 RNA5SP413-201ENST00000516373 109 ntBASIC18.84■□□□□ 0.61
SOX3P41225 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.84■□□□□ 0.61
SOX3P41225 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.84■□□□□ 0.61
SOX3P41225 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 AC105020.6-201ENST00000621523 1217 ntBASIC18.84■□□□□ 0.61
SOX3P41225 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SOX3P41225 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
SOX3P41225 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SOX3P41225 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.84■□□□□ 0.61
SOX3P41225 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.84■□□□□ 0.61
SOX3P41225 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SOX3P41225 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SOX3P41225 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.83■□□□□ 0.61
SOX3P41225 AC121338.2-201ENST00000622535 1744 ntBASIC18.83■□□□□ 0.61
SOX3P41225 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
SOX3P41225 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.83■□□□□ 0.61
SOX3P41225 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SOX3P41225 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.83■□□□□ 0.61
SOX3P41225 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SOX3P41225 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.83■□□□□ 0.61
SOX3P41225 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
SOX3P41225 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX3P41225 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX3P41225 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.83■□□□□ 0.6
SOX3P41225 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.83■□□□□ 0.6
SOX3P41225 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.83■□□□□ 0.6
SOX3P41225 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX3P41225 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SOX3P41225 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SOX3P41225 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX3P41225 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX3P41225 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.83■□□□□ 0.6
SOX3P41225 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SOX3P41225 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.83■□□□□ 0.6
SOX3P41225 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX3P41225 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX3P41225 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.83■□□□□ 0.6
SOX3P41225 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX3P41225 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
SOX3P41225 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SOX3P41225 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
SOX3P41225 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SOX3P41225 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
SOX3P41225 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SOX3P41225 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.82■□□□□ 0.6
SOX3P41225 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
SOX3P41225 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.82■□□□□ 0.6
SOX3P41225 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
SOX3P41225 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SOX3P41225 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SOX3P41225 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SOX3P41225 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SOX3P41225 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SOX3P41225 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.82■□□□□ 0.6
SOX3P41225 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SOX3P41225 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SOX3P41225 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SOX3P41225 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.82■□□□□ 0.6
SOX3P41225 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SOX3P41225 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.82■□□□□ 0.6
SOX3P41225 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.82■□□□□ 0.6
SOX3P41225 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SOX3P41225 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.82■□□□□ 0.6
SOX3P41225 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.82■□□□□ 0.6
SOX3P41225 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.82■□□□□ 0.6
SOX3P41225 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.82■□□□□ 0.6
SOX3P41225 AC006128.1-201ENST00000624704 1661 ntBASIC18.82■□□□□ 0.6
SOX3P41225 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SOX3P41225 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms