Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
APOEP02649 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
APOEP02649 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
APOEP02649 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.01■□□□□ 0.95
APOEP02649 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
APOEP02649 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
APOEP02649 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.01■□□□□ 0.95
APOEP02649 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.01■□□□□ 0.95
APOEP02649 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
APOEP02649 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.01■□□□□ 0.95
APOEP02649 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
APOEP02649 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
APOEP02649 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
APOEP02649 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.01■□□□□ 0.95
APOEP02649 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
APOEP02649 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
APOEP02649 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.01■□□□□ 0.95
APOEP02649 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.01■□□□□ 0.95
APOEP02649 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.01■□□□□ 0.95
APOEP02649 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
APOEP02649 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
APOEP02649 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
APOEP02649 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
APOEP02649 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.01■□□□□ 0.95
APOEP02649 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
APOEP02649 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.01■□□□□ 0.95
APOEP02649 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
APOEP02649 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.01■□□□□ 0.95
APOEP02649 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
APOEP02649 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21■□□□□ 0.95
APOEP02649 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21■□□□□ 0.95
APOEP02649 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
APOEP02649 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
APOEP02649 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
APOEP02649 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21■□□□□ 0.95
APOEP02649 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
APOEP02649 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
APOEP02649 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21■□□□□ 0.95
APOEP02649 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21■□□□□ 0.95
APOEP02649 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21■□□□□ 0.95
APOEP02649 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
APOEP02649 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
APOEP02649 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
APOEP02649 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
APOEP02649 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
APOEP02649 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21■□□□□ 0.95
APOEP02649 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21■□□□□ 0.95
APOEP02649 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21■□□□□ 0.95
APOEP02649 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21■□□□□ 0.95
APOEP02649 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
APOEP02649 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
APOEP02649 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
APOEP02649 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
APOEP02649 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
APOEP02649 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
APOEP02649 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
APOEP02649 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
APOEP02649 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.99■□□□□ 0.95
APOEP02649 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.99■□□□□ 0.95
APOEP02649 HLA-B-256ENST00000639848 1089 ntBASIC20.99■□□□□ 0.95
APOEP02649 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
APOEP02649 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
APOEP02649 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
APOEP02649 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
APOEP02649 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
APOEP02649 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
APOEP02649 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
APOEP02649 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
APOEP02649 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
APOEP02649 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
APOEP02649 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.98■□□□□ 0.95
APOEP02649 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
APOEP02649 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
APOEP02649 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
APOEP02649 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
APOEP02649 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.98■□□□□ 0.95
APOEP02649 AC060766.5-201ENST00000590539 871 ntBASIC20.98■□□□□ 0.95
APOEP02649 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
APOEP02649 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
APOEP02649 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.98■□□□□ 0.95
APOEP02649 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
APOEP02649 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
APOEP02649 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.98■□□□□ 0.95
APOEP02649 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
APOEP02649 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.97■□□□□ 0.95
APOEP02649 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
APOEP02649 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.97■□□□□ 0.95
APOEP02649 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
APOEP02649 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
APOEP02649 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
APOEP02649 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.97■□□□□ 0.95
APOEP02649 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
APOEP02649 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
APOEP02649 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.97■□□□□ 0.95
APOEP02649 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.97■□□□□ 0.95
APOEP02649 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
APOEP02649 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
APOEP02649 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
APOEP02649 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.96■□□□□ 0.95
APOEP02649 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms