Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SDC3O75056 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SDC3O75056 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SDC3O75056 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SDC3O75056 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.69■□□□□ 0.74
SDC3O75056 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SDC3O75056 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SDC3O75056 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.68■□□□□ 0.74
SDC3O75056 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SDC3O75056 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC3O75056 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SDC3O75056 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC3O75056 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.68■□□□□ 0.74
SDC3O75056 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC3O75056 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC3O75056 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SDC3O75056 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SDC3O75056 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.68■□□□□ 0.74
SDC3O75056 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC3O75056 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.68■□□□□ 0.74
SDC3O75056 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.68■□□□□ 0.74
SDC3O75056 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.68■□□□□ 0.74
SDC3O75056 AL121829.2-201ENST00000620908 328 ntBASIC19.68■□□□□ 0.74
SDC3O75056 HTR7P1-201ENST00000538670 1336 ntBASIC19.68■□□□□ 0.74
SDC3O75056 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC3O75056 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SDC3O75056 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.68■□□□□ 0.74
SDC3O75056 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.68■□□□□ 0.74
SDC3O75056 AL049796.1-201ENST00000565336 1766 ntBASIC19.67■□□□□ 0.74
SDC3O75056 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 NBPF21P-201ENST00000425093 1451 ntBASIC19.67■□□□□ 0.74
SDC3O75056 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SDC3O75056 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.67■□□□□ 0.74
SDC3O75056 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.67■□□□□ 0.74
SDC3O75056 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.67■□□□□ 0.74
SDC3O75056 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.67■□□□□ 0.74
SDC3O75056 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.67■□□□□ 0.74
SDC3O75056 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.67■□□□□ 0.74
SDC3O75056 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SDC3O75056 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.67■□□□□ 0.74
SDC3O75056 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.67■□□□□ 0.74
SDC3O75056 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SDC3O75056 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC3O75056 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC3O75056 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC3O75056 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.66■□□□□ 0.74
SDC3O75056 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC3O75056 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC3O75056 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SDC3O75056 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC3O75056 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC3O75056 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.66■□□□□ 0.74
SDC3O75056 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.66■□□□□ 0.74
SDC3O75056 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.66■□□□□ 0.74
SDC3O75056 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.66■□□□□ 0.74
SDC3O75056 AC026471.5-201ENST00000615068 467 ntBASIC19.66■□□□□ 0.74
SDC3O75056 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SDC3O75056 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC3O75056 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.66■□□□□ 0.74
SDC3O75056 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.66■□□□□ 0.74
SDC3O75056 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SDC3O75056 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDC3O75056 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDC3O75056 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDC3O75056 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SDC3O75056 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.65■□□□□ 0.74
SDC3O75056 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SDC3O75056 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDC3O75056 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.65■□□□□ 0.74
SDC3O75056 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SDC3O75056 AF186192.3-201ENST00000583427 947 ntBASIC19.65■□□□□ 0.74
SDC3O75056 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.65■□□□□ 0.74
SDC3O75056 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.65■□□□□ 0.74
SDC3O75056 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDC3O75056 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDC3O75056 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDC3O75056 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SDC3O75056 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SDC3O75056 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SDC3O75056 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SDC3O75056 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SDC3O75056 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDC3O75056 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SDC3O75056 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SDC3O75056 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.64■□□□□ 0.74
SDC3O75056 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms