Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.8■■□□□ 1.08
VPS52Q8N1B4 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS52Q8N1B4 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS52Q8N1B4 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS52Q8N1B4 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 AC005829.2-201ENST00000571422 1056 ntBASIC21.79■■□□□ 1.08
VPS52Q8N1B4 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS52Q8N1B4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 AC005229.4-201ENST00000610085 2198 ntBASIC21.78■■□□□ 1.08
VPS52Q8N1B4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.78■■□□□ 1.08
VPS52Q8N1B4 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 AC124016.1-201ENST00000609552 612 ntBASIC21.78■■□□□ 1.08
VPS52Q8N1B4 AL356652.1-201ENST00000615962 565 ntBASIC21.78■■□□□ 1.08
VPS52Q8N1B4 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
VPS52Q8N1B4 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.77■■□□□ 1.08
VPS52Q8N1B4 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS52Q8N1B4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.07
VPS52Q8N1B4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 ECEL1P3-201ENST00000427961 737 ntBASIC21.76■■□□□ 1.07
VPS52Q8N1B4 AC012618.2-201ENST00000428058 849 ntBASIC21.76■■□□□ 1.07
VPS52Q8N1B4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS52Q8N1B4 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VPS52Q8N1B4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms