Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 AL121829.2-201ENST00000620908 328 ntBASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CSPG4Q6UVK1 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 GOLGA2P6-201ENST00000340929 2049 ntBASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 KRT18P56-201ENST00000507275 550 ntBASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CSPG4Q6UVK1 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 DYM-203ENST00000442713 2147 ntTSL 2 BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 DUSP5P1-201ENST00000441325 1139 ntBASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC16.63■□□□□ 0.25
CSPG4Q6UVK1 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 UNC93B2-201ENST00000285383 730 ntBASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 MIR1238-201ENST00000408483 83 ntBASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 AC026396.1-201ENST00000419388 421 ntBASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 PGM5P4-201ENST00000421970 445 ntBASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 AC087388.1-201ENST00000571370 1112 ntBASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 AC091076.1-201ENST00000610741 619 ntBASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 STK25-205ENST00000405883 1904 ntTSL 2 BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 AC233723.2-201ENST00000623798 2106 ntBASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CSPG4Q6UVK1 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CSPG4Q6UVK1 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms