Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.38■□□□□ 0.53
CDH11P55287 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH11P55287 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH11P55287 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH11P55287 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH11P55287 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH11P55287 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH11P55287 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CDH11P55287 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH11P55287 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH11P55287 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH11P55287 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.37■□□□□ 0.53
CDH11P55287 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH11P55287 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH11P55287 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH11P55287 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH11P55287 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH11P55287 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH11P55287 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH11P55287 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CDH11P55287 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CDH11P55287 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CDH11P55287 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CDH11P55287 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.36■□□□□ 0.53
CDH11P55287 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.36■□□□□ 0.53
CDH11P55287 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.36■□□□□ 0.53
CDH11P55287 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.36■□□□□ 0.53
CDH11P55287 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.36■□□□□ 0.53
CDH11P55287 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.36■□□□□ 0.53
CDH11P55287 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.36■□□□□ 0.53
CDH11P55287 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.36■□□□□ 0.53
CDH11P55287 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH11P55287 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDH11P55287 MYCNOS-205ENST00000641950 531 ntBASIC18.36■□□□□ 0.53
CDH11P55287 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH11P55287 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.35■□□□□ 0.53
CDH11P55287 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.35■□□□□ 0.53
CDH11P55287 AC087289.5-201ENST00000586076 3175 ntBASIC18.35■□□□□ 0.53
CDH11P55287 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.35■□□□□ 0.53
CDH11P55287 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CDH11P55287 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CDH11P55287 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 AC010141.2-201ENST00000452426 721 ntBASIC18.35■□□□□ 0.53
CDH11P55287 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.35■□□□□ 0.53
CDH11P55287 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
CDH11P55287 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 SMG8-203ENST00000578922 2178 ntBASIC18.35■□□□□ 0.53
CDH11P55287 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.35■□□□□ 0.53
CDH11P55287 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.35■□□□□ 0.53
CDH11P55287 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDH11P55287 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.35■□□□□ 0.53
CDH11P55287 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
CDH11P55287 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH11P55287 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH11P55287 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH11P55287 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
CDH11P55287 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.34■□□□□ 0.53
CDH11P55287 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH11P55287 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH11P55287 CROCCP5-201ENST00000436658 830 ntBASIC18.34■□□□□ 0.53
CDH11P55287 AC138907.5-202ENST00000569484 235 ntBASIC18.34■□□□□ 0.53
CDH11P55287 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
CDH11P55287 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH11P55287 AC008175.2-201ENST00000612840 297 ntBASIC18.34■□□□□ 0.53
CDH11P55287 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
CDH11P55287 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.34■□□□□ 0.53
CDH11P55287 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
CDH11P55287 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH11P55287 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CDH11P55287 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.34■□□□□ 0.53
CDH11P55287 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CDH11P55287 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH11P55287 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.34■□□□□ 0.53
CDH11P55287 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDH11P55287 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDH11P55287 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH11P55287 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CDH11P55287 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH11P55287 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH11P55287 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CDH11P55287 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
CDH11P55287 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CDH11P55287 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.33■□□□□ 0.53
CDH11P55287 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CDH11P55287 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
CDH11P55287 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDH11P55287 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms