Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC26.81■■□□□ 1.88
COL18A1P39060 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
COL18A1P39060 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
COL18A1P39060 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC26.81■■□□□ 1.88
COL18A1P39060 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC26.81■■□□□ 1.88
COL18A1P39060 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
COL18A1P39060 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
COL18A1P39060 CFL2-205ENST00000555765 632 ntTSL 2 BASIC26.81■■□□□ 1.88
COL18A1P39060 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC26.81■■□□□ 1.88
COL18A1P39060 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC26.81■■□□□ 1.88
COL18A1P39060 AC005363.2-201ENST00000618631 242 ntBASIC26.81■■□□□ 1.88
COL18A1P39060 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
COL18A1P39060 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC26.8■■□□□ 1.88
COL18A1P39060 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC26.8■■□□□ 1.88
COL18A1P39060 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
COL18A1P39060 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC26.8■■□□□ 1.88
COL18A1P39060 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC26.8■■□□□ 1.88
COL18A1P39060 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
COL18A1P39060 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC26.8■■□□□ 1.88
COL18A1P39060 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC26.79■■□□□ 1.88
COL18A1P39060 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
COL18A1P39060 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC26.79■■□□□ 1.88
COL18A1P39060 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
COL18A1P39060 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
COL18A1P39060 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
COL18A1P39060 AC233723.2-201ENST00000623798 2106 ntBASIC26.79■■□□□ 1.88
COL18A1P39060 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
COL18A1P39060 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
COL18A1P39060 DUX4L26-201ENST00000489078 1255 ntBASIC26.79■■□□□ 1.88
COL18A1P39060 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC26.79■■□□□ 1.88
COL18A1P39060 TPM1-226ENST00000560959 925 ntTSL 2 BASIC26.79■■□□□ 1.88
COL18A1P39060 NAPSB-206ENST00000562112 1266 ntBASIC26.79■■□□□ 1.88
COL18A1P39060 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
COL18A1P39060 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC26.78■■□□□ 1.88
COL18A1P39060 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
COL18A1P39060 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL18A1P39060 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
COL18A1P39060 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
COL18A1P39060 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL18A1P39060 LTBR-211ENST00000543190 785 ntTSL 3 BASIC26.78■■□□□ 1.88
COL18A1P39060 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL18A1P39060 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
COL18A1P39060 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
COL18A1P39060 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC26.77■■□□□ 1.88
COL18A1P39060 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC26.77■■□□□ 1.88
COL18A1P39060 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC26.77■■□□□ 1.88
COL18A1P39060 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
COL18A1P39060 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC26.77■■□□□ 1.88
COL18A1P39060 PRR31-201ENST00000371629 978 ntTSL 2 BASIC26.77■■□□□ 1.88
COL18A1P39060 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC26.77■■□□□ 1.88
COL18A1P39060 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC26.77■■□□□ 1.88
COL18A1P39060 ABBA01031674.1-201ENST00000635145 728 ntBASIC26.77■■□□□ 1.88
COL18A1P39060 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC26.77■■□□□ 1.88
COL18A1P39060 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC26.77■■□□□ 1.88
COL18A1P39060 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC26.77■■□□□ 1.88
COL18A1P39060 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
COL18A1P39060 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC26.77■■□□□ 1.88
COL18A1P39060 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC26.77■■□□□ 1.88
COL18A1P39060 AC026271.3-201ENST00000571884 352 ntBASIC26.76■■□□□ 1.88
COL18A1P39060 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC26.76■■□□□ 1.88
COL18A1P39060 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL18A1P39060 H19-201ENST00000411754 1788 ntTSL 5 BASIC26.76■■□□□ 1.87
COL18A1P39060 AC244015.2-201ENST00000616358 1861 ntBASIC26.76■■□□□ 1.87
COL18A1P39060 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
COL18A1P39060 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL18A1P39060 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
COL18A1P39060 ARMC10P1-201ENST00000313754 855 ntBASIC26.76■■□□□ 1.87
COL18A1P39060 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC26.76■■□□□ 1.87
COL18A1P39060 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC26.76■■□□□ 1.87
COL18A1P39060 AC006011.2-201ENST00000621313 1158 ntBASIC26.76■■□□□ 1.87
COL18A1P39060 CR392000.1-201ENST00000624770 1228 ntBASIC26.76■■□□□ 1.87
COL18A1P39060 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL18A1P39060 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL18A1P39060 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
COL18A1P39060 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
COL18A1P39060 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC26.75■■□□□ 1.87
COL18A1P39060 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
COL18A1P39060 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL18A1P39060 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL18A1P39060 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL18A1P39060 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC26.75■■□□□ 1.87
COL18A1P39060 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
COL18A1P39060 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
COL18A1P39060 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC26.75■■□□□ 1.87
COL18A1P39060 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC26.75■■□□□ 1.87
COL18A1P39060 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
COL18A1P39060 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL18A1P39060 KRT18P22-201ENST00000402024 1347 ntBASIC26.74■■□□□ 1.87
COL18A1P39060 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC26.74■■□□□ 1.87
COL18A1P39060 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC26.74■■□□□ 1.87
COL18A1P39060 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC26.74■■□□□ 1.87
COL18A1P39060 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
COL18A1P39060 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC26.74■■□□□ 1.87
COL18A1P39060 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC26.74■■□□□ 1.87
COL18A1P39060 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
COL18A1P39060 AC010203.1-204ENST00000548782 407 ntBASIC26.74■■□□□ 1.87
COL18A1P39060 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
COL18A1P39060 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC26.73■■□□□ 1.87
COL18A1P39060 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC26.73■■□□□ 1.87
COL18A1P39060 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC26.73■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms