Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CXCL1P09341 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CXCL1P09341 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
CXCL1P09341 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
CXCL1P09341 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CXCL1P09341 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
CXCL1P09341 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC15.59■□□□□ 0.09
CXCL1P09341 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CXCL1P09341 MIR4787-201ENST00000607364 84 ntBASIC15.59■□□□□ 0.09
CXCL1P09341 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CXCL1P09341 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CXCL1P09341 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CXCL1P09341 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
CXCL1P09341 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC15.59■□□□□ 0.09
CXCL1P09341 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
CXCL1P09341 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC15.59■□□□□ 0.09
CXCL1P09341 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
CXCL1P09341 AC009113.1-201ENST00000570267 2443 ntBASIC15.58■□□□□ 0.09
CXCL1P09341 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.58■□□□□ 0.09
CXCL1P09341 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.09
CXCL1P09341 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.09
CXCL1P09341 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CXCL1P09341 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.58■□□□□ 0.09
CXCL1P09341 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CXCL1P09341 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CXCL1P09341 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC15.58■□□□□ 0.09
CXCL1P09341 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL1P09341 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CXCL1P09341 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL1P09341 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC15.58■□□□□ 0.08
CXCL1P09341 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC15.58■□□□□ 0.08
CXCL1P09341 AC003102.1-202ENST00000563394 1796 ntBASIC15.58■□□□□ 0.08
CXCL1P09341 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL1P09341 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL1P09341 pRNA.6-201ENST00000610482 90 ntBASIC15.58■□□□□ 0.08
CXCL1P09341 pRNA.5-201ENST00000612139 90 ntBASIC15.58■□□□□ 0.08
CXCL1P09341 pRNA.11-201ENST00000618423 90 ntBASIC15.58■□□□□ 0.08
CXCL1P09341 pRNA.13-201ENST00000619112 90 ntBASIC15.58■□□□□ 0.08
CXCL1P09341 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL1P09341 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.58■□□□□ 0.08
CXCL1P09341 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL1P09341 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL1P09341 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC15.58■□□□□ 0.08
CXCL1P09341 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
CXCL1P09341 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL1P09341 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.58■□□□□ 0.08
CXCL1P09341 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL1P09341 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CXCL1P09341 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CXCL1P09341 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC15.57■□□□□ 0.08
CXCL1P09341 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC15.57■□□□□ 0.08
CXCL1P09341 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CXCL1P09341 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC15.57■□□□□ 0.08
CXCL1P09341 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 AC139713.2-201ENST00000641328 2723 ntBASIC15.57■□□□□ 0.08
CXCL1P09341 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 LSM4-201ENST00000252816 986 ntTSL 2 BASIC15.57■□□□□ 0.08
CXCL1P09341 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC15.57■□□□□ 0.08
CXCL1P09341 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC15.57■□□□□ 0.08
CXCL1P09341 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
CXCL1P09341 COMP-202ENST00000425807 2292 ntTSL 2 BASIC15.57■□□□□ 0.08
CXCL1P09341 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
CXCL1P09341 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CXCL1P09341 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL1P09341 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CXCL1P09341 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL1P09341 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC15.56■□□□□ 0.08
CXCL1P09341 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15.56■□□□□ 0.08
CXCL1P09341 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL1P09341 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.56■□□□□ 0.08
CXCL1P09341 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL1P09341 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL1P09341 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL1P09341 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.56■□□□□ 0.08
CXCL1P09341 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL1P09341 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC15.56■□□□□ 0.08
CXCL1P09341 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL1P09341 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CXCL1P09341 MIR6724-1-201ENST00000616420 92 ntBASIC15.56■□□□□ 0.08
CXCL1P09341 MIR6724-2-201ENST00000616483 92 ntBASIC15.56■□□□□ 0.08
CXCL1P09341 MIR6724-4-201ENST00000617390 92 ntBASIC15.56■□□□□ 0.08
CXCL1P09341 MIR6724-3-201ENST00000622482 92 ntBASIC15.56■□□□□ 0.08
CXCL1P09341 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC15.56■□□□□ 0.08
CXCL1P09341 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CXCL1P09341 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL1P09341 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL1P09341 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms