Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
COL4A1P02462 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
COL4A1P02462 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC24.83■■□□□ 1.57
COL4A1P02462 PPOX-219ENST00000544598 813 ntTSL 2 BASIC24.83■■□□□ 1.57
COL4A1P02462 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC24.83■■□□□ 1.57
COL4A1P02462 AC010331.1-201ENST00000611423 582 ntBASIC24.83■■□□□ 1.57
COL4A1P02462 AC026471.5-201ENST00000615068 467 ntBASIC24.83■■□□□ 1.57
COL4A1P02462 AL121906.2-201ENST00000621597 723 ntBASIC24.83■■□□□ 1.57
COL4A1P02462 AC133561.5-201ENST00000635547 218 ntBASIC24.83■■□□□ 1.57
COL4A1P02462 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
COL4A1P02462 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
COL4A1P02462 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.56
COL4A1P02462 NBPF21P-201ENST00000425093 1451 ntBASIC24.83■■□□□ 1.56
COL4A1P02462 TREX2-204ENST00000370212 861 ntTSL 5 BASIC24.82■■□□□ 1.56
COL4A1P02462 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
COL4A1P02462 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
COL4A1P02462 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC24.82■■□□□ 1.56
COL4A1P02462 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC24.82■■□□□ 1.56
COL4A1P02462 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC24.82■■□□□ 1.56
COL4A1P02462 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC24.82■■□□□ 1.56
COL4A1P02462 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
COL4A1P02462 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
COL4A1P02462 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
COL4A1P02462 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
COL4A1P02462 AL135905.2-201ENST00000584934 1404 ntBASIC24.82■■□□□ 1.56
COL4A1P02462 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC24.82■■□□□ 1.56
COL4A1P02462 HTR7P1-201ENST00000538670 1336 ntBASIC24.82■■□□□ 1.56
COL4A1P02462 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC24.82■■□□□ 1.56
COL4A1P02462 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
COL4A1P02462 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
COL4A1P02462 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
COL4A1P02462 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC24.81■■□□□ 1.56
COL4A1P02462 KRT16P5-201ENST00000455284 522 ntBASIC24.81■■□□□ 1.56
COL4A1P02462 PNN-205ENST00000556530 601 ntTSL 2 BASIC24.81■■□□□ 1.56
COL4A1P02462 AP003071.4-201ENST00000562276 1284 ntBASIC24.81■■□□□ 1.56
COL4A1P02462 AC097493.4-201ENST00000641197 219 ntBASIC24.81■■□□□ 1.56
COL4A1P02462 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
COL4A1P02462 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC24.81■■□□□ 1.56
COL4A1P02462 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
COL4A1P02462 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
COL4A1P02462 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC24.81■■□□□ 1.56
COL4A1P02462 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC24.81■■□□□ 1.56
COL4A1P02462 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC24.81■■□□□ 1.56
COL4A1P02462 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC24.81■■□□□ 1.56
COL4A1P02462 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
COL4A1P02462 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC24.81■■□□□ 1.56
COL4A1P02462 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
COL4A1P02462 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
COL4A1P02462 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
COL4A1P02462 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC24.8■■□□□ 1.56
COL4A1P02462 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC24.8■■□□□ 1.56
COL4A1P02462 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
COL4A1P02462 BID-212ENST00000614949 1988 ntTSL 5 BASIC24.8■■□□□ 1.56
COL4A1P02462 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
COL4A1P02462 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
COL4A1P02462 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC24.8■■□□□ 1.56
COL4A1P02462 RPS15-203ENST00000586096 570 ntTSL 2 BASIC24.8■■□□□ 1.56
COL4A1P02462 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
COL4A1P02462 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
COL4A1P02462 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC24.8■■□□□ 1.56
COL4A1P02462 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC24.8■■□□□ 1.56
COL4A1P02462 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
COL4A1P02462 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
COL4A1P02462 AC121338.2-201ENST00000622535 1744 ntBASIC24.79■■□□□ 1.56
COL4A1P02462 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC24.79■■□□□ 1.56
COL4A1P02462 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.79■■□□□ 1.56
COL4A1P02462 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
COL4A1P02462 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
COL4A1P02462 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
COL4A1P02462 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
COL4A1P02462 FAM197Y1-201ENST00000421178 764 ntBASIC24.79■■□□□ 1.56
COL4A1P02462 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
COL4A1P02462 CD177P1-201ENST00000606252 935 ntBASIC24.79■■□□□ 1.56
COL4A1P02462 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC24.79■■□□□ 1.56
COL4A1P02462 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
COL4A1P02462 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC24.79■■□□□ 1.56
COL4A1P02462 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
COL4A1P02462 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC24.78■■□□□ 1.56
COL4A1P02462 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
COL4A1P02462 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC24.78■■□□□ 1.56
COL4A1P02462 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
COL4A1P02462 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC24.78■■□□□ 1.56
COL4A1P02462 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
COL4A1P02462 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC24.78■■□□□ 1.56
COL4A1P02462 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC24.78■■□□□ 1.56
COL4A1P02462 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC24.78■■□□□ 1.56
COL4A1P02462 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC24.78■■□□□ 1.56
COL4A1P02462 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
COL4A1P02462 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
COL4A1P02462 MIR1224-201ENST00000408193 85 ntBASIC24.78■■□□□ 1.56
COL4A1P02462 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC24.78■■□□□ 1.56
COL4A1P02462 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC24.78■■□□□ 1.56
COL4A1P02462 NUDT16P1-203ENST00000513809 620 ntBASIC24.78■■□□□ 1.56
COL4A1P02462 REXO1L10P-201ENST00000615707 1290 ntBASIC24.78■■□□□ 1.56
COL4A1P02462 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
COL4A1P02462 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
COL4A1P02462 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
COL4A1P02462 KRT17P2-201ENST00000300992 1314 ntBASIC24.77■■□□□ 1.56
COL4A1P02462 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC24.77■■□□□ 1.56
COL4A1P02462 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms