Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.93■■□□□ 1.1
LRCH3Q96II8 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 IER3-202ENST00000376377 1350 ntBASIC21.93■■□□□ 1.1
LRCH3Q96II8 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.93■■□□□ 1.1
LRCH3Q96II8 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
LRCH3Q96II8 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
LRCH3Q96II8 FAM86EP-206ENST00000510506 987 ntBASIC21.93■■□□□ 1.1
LRCH3Q96II8 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
LRCH3Q96II8 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LRCH3Q96II8 CR392000.1-201ENST00000624770 1228 ntBASIC21.93■■□□□ 1.1
LRCH3Q96II8 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
LRCH3Q96II8 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
LRCH3Q96II8 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LRCH3Q96II8 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LRCH3Q96II8 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.92■■□□□ 1.1
LRCH3Q96II8 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LRCH3Q96II8 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.92■■□□□ 1.1
LRCH3Q96II8 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.92■■□□□ 1.1
LRCH3Q96II8 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.92■■□□□ 1.1
LRCH3Q96II8 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
LRCH3Q96II8 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.92■■□□□ 1.1
LRCH3Q96II8 AL117328.2-201ENST00000624617 1940 ntBASIC21.92■■□□□ 1.1
LRCH3Q96II8 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
LRCH3Q96II8 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LRCH3Q96II8 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LRCH3Q96II8 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
LRCH3Q96II8 EP400NL-214ENST00000641289 2402 ntBASIC21.91■■□□□ 1.1
LRCH3Q96II8 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
LRCH3Q96II8 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
LRCH3Q96II8 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
LRCH3Q96II8 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LRCH3Q96II8 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LRCH3Q96II8 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.91■■□□□ 1.1
LRCH3Q96II8 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.91■■□□□ 1.1
LRCH3Q96II8 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.91■■□□□ 1.1
LRCH3Q96II8 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.91■■□□□ 1.1
LRCH3Q96II8 KRT18P16-201ENST00000510337 1294 ntBASIC21.91■■□□□ 1.1
LRCH3Q96II8 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
LRCH3Q96II8 AC139887.4-201ENST00000607877 719 ntBASIC21.91■■□□□ 1.1
LRCH3Q96II8 AC004263.2-201ENST00000617183 678 ntBASIC21.91■■□□□ 1.1
LRCH3Q96II8 AL121829.2-201ENST00000620908 328 ntBASIC21.91■■□□□ 1.1
LRCH3Q96II8 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.91■■□□□ 1.1
LRCH3Q96II8 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
LRCH3Q96II8 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LRCH3Q96II8 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
LRCH3Q96II8 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
LRCH3Q96II8 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
LRCH3Q96II8 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC21.91■■□□□ 1.1
LRCH3Q96II8 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
LRCH3Q96II8 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
LRCH3Q96II8 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LRCH3Q96II8 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.9■■□□□ 1.1
LRCH3Q96II8 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LRCH3Q96II8 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LRCH3Q96II8 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LRCH3Q96II8 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
LRCH3Q96II8 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LRCH3Q96II8 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.9■■□□□ 1.1
LRCH3Q96II8 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.9■■□□□ 1.1
LRCH3Q96II8 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.9■■□□□ 1.1
LRCH3Q96II8 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.9■■□□□ 1.1
LRCH3Q96II8 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LRCH3Q96II8 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LRCH3Q96II8 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.9■■□□□ 1.1
LRCH3Q96II8 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
LRCH3Q96II8 ANOS2P-203ENST00000472227 1816 ntBASIC21.9■■□□□ 1.1
LRCH3Q96II8 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
LRCH3Q96II8 AC233723.2-201ENST00000623798 2106 ntBASIC21.89■■□□□ 1.1
LRCH3Q96II8 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
LRCH3Q96II8 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.89■■□□□ 1.1
LRCH3Q96II8 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
LRCH3Q96II8 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.89■■□□□ 1.09
LRCH3Q96II8 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.89■■□□□ 1.09
LRCH3Q96II8 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
LRCH3Q96II8 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.89■■□□□ 1.09
LRCH3Q96II8 C2orf69P3-201ENST00000565542 1120 ntBASIC21.89■■□□□ 1.09
LRCH3Q96II8 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC21.89■■□□□ 1.09
LRCH3Q96II8 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.89■■□□□ 1.09
LRCH3Q96II8 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.89■■□□□ 1.09
LRCH3Q96II8 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
LRCH3Q96II8 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
LRCH3Q96II8 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LRCH3Q96II8 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
LRCH3Q96II8 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LRCH3Q96II8 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.88■■□□□ 1.09
LRCH3Q96II8 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
LRCH3Q96II8 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms