Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 AC090192.1-201ENST00000517740 490 ntBASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 AL589743.5-201ENST00000616611 1050 ntBASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 AC105020.6-201ENST00000621523 1217 ntBASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.34■□□□□ 0.69
TRIM40Q6P9F5 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM40Q6P9F5 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRIM40Q6P9F5 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.69
TRIM40Q6P9F5 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 AL355472.2-201ENST00000422958 438 ntBASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 AC083906.2-201ENST00000511578 360 ntBASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
TRIM40Q6P9F5 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 GPX1P1-201ENST00000388829 606 ntBASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 SLC29A4P1-201ENST00000398760 971 ntBASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 NCF1B-203ENST00000435988 1254 ntBASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.32■□□□□ 0.68
TRIM40Q6P9F5 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM40Q6P9F5 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM40Q6P9F5 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM40Q6P9F5 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM40Q6P9F5 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM40Q6P9F5 LSM12P1-201ENST00000411836 588 ntBASIC19.31■□□□□ 0.68
TRIM40Q6P9F5 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM40Q6P9F5 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM40Q6P9F5 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.31■□□□□ 0.68
TRIM40Q6P9F5 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRIM40Q6P9F5 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms