Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
LIMS3P0CW19 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.91■□□□□ 0.46
LIMS3P0CW19 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.91■□□□□ 0.46
LIMS3P0CW19 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.91■□□□□ 0.46
LIMS3P0CW19 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMS3P0CW19 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC17.91■□□□□ 0.46
LIMS3P0CW19 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 AP001330.3-201ENST00000520123 633 ntBASIC17.91■□□□□ 0.46
LIMS3P0CW19 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
LIMS3P0CW19 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.91■□□□□ 0.46
LIMS3P0CW19 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
LIMS3P0CW19 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
LIMS3P0CW19 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LIMS3P0CW19 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
LIMS3P0CW19 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.9■□□□□ 0.46
LIMS3P0CW19 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.9■□□□□ 0.46
LIMS3P0CW19 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
LIMS3P0CW19 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC17.9■□□□□ 0.46
LIMS3P0CW19 AC079140.4-201ENST00000507448 529 ntBASIC17.9■□□□□ 0.46
LIMS3P0CW19 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.9■□□□□ 0.46
LIMS3P0CW19 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 AC120498.10-201ENST00000621827 505 ntBASIC17.9■□□□□ 0.46
LIMS3P0CW19 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 Z82202.1-201ENST00000623446 1880 ntBASIC17.9■□□□□ 0.46
LIMS3P0CW19 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIMS3P0CW19 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
LIMS3P0CW19 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
LIMS3P0CW19 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMS3P0CW19 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMS3P0CW19 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMS3P0CW19 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
LIMS3P0CW19 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMS3P0CW19 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC17.89■□□□□ 0.45
LIMS3P0CW19 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMS3P0CW19 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMS3P0CW19 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMS3P0CW19 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMS3P0CW19 AC010141.2-201ENST00000452426 721 ntBASIC17.89■□□□□ 0.45
LIMS3P0CW19 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMS3P0CW19 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMS3P0CW19 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC17.89■□□□□ 0.45
LIMS3P0CW19 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC17.89■□□□□ 0.45
LIMS3P0CW19 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC17.89■□□□□ 0.45
LIMS3P0CW19 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMS3P0CW19 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMS3P0CW19 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMS3P0CW19 RASA4CP-201ENST00000424092 1398 ntBASIC17.89■□□□□ 0.45
LIMS3P0CW19 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
LIMS3P0CW19 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMS3P0CW19 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.89■□□□□ 0.45
LIMS3P0CW19 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIMS3P0CW19 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIMS3P0CW19 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIMS3P0CW19 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMS3P0CW19 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIMS3P0CW19 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMS3P0CW19 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMS3P0CW19 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMS3P0CW19 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 NT5C3AP1-201ENST00000394500 1012 ntBASIC17.88■□□□□ 0.45
LIMS3P0CW19 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC17.88■□□□□ 0.45
LIMS3P0CW19 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIMS3P0CW19 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms