Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VIMP08670 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
VIMP08670 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.23■□□□□ 0.83
VIMP08670 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.23■□□□□ 0.83
VIMP08670 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.23■□□□□ 0.83
VIMP08670 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
VIMP08670 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VIMP08670 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VIMP08670 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VIMP08670 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC20.23■□□□□ 0.83
VIMP08670 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VIMP08670 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VIMP08670 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
VIMP08670 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
VIMP08670 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VIMP08670 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.22■□□□□ 0.83
VIMP08670 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.22■□□□□ 0.83
VIMP08670 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VIMP08670 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VIMP08670 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VIMP08670 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.22■□□□□ 0.83
VIMP08670 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VIMP08670 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VIMP08670 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.22■□□□□ 0.83
VIMP08670 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VIMP08670 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.22■□□□□ 0.83
VIMP08670 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.22■□□□□ 0.83
VIMP08670 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.22■□□□□ 0.83
VIMP08670 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VIMP08670 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
VIMP08670 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VIMP08670 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
VIMP08670 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VIMP08670 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VIMP08670 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VIMP08670 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
VIMP08670 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VIMP08670 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VIMP08670 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VIMP08670 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VIMP08670 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VIMP08670 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.21■□□□□ 0.83
VIMP08670 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.21■□□□□ 0.83
VIMP08670 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.21■□□□□ 0.83
VIMP08670 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
VIMP08670 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VIMP08670 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VIMP08670 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VIMP08670 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
VIMP08670 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.21■□□□□ 0.83
VIMP08670 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VIMP08670 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.21■□□□□ 0.83
VIMP08670 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
VIMP08670 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.21■□□□□ 0.83
VIMP08670 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.21■□□□□ 0.83
VIMP08670 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VIMP08670 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
VIMP08670 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.2■□□□□ 0.82
VIMP08670 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VIMP08670 TMEM179-206ENST00000616017 1645 ntBASIC20.2■□□□□ 0.82
VIMP08670 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VIMP08670 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
VIMP08670 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.2■□□□□ 0.82
VIMP08670 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.2■□□□□ 0.82
VIMP08670 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
VIMP08670 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.2■□□□□ 0.82
VIMP08670 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VIMP08670 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VIMP08670 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
VIMP08670 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VIMP08670 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.2■□□□□ 0.82
VIMP08670 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
VIMP08670 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VIMP08670 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VIMP08670 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VIMP08670 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.2■□□□□ 0.82
VIMP08670 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VIMP08670 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VIMP08670 AC055733.4-201ENST00000638462 1354 ntBASIC20.2■□□□□ 0.82
VIMP08670 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VIMP08670 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VIMP08670 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.19■□□□□ 0.82
VIMP08670 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VIMP08670 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.19■□□□□ 0.82
VIMP08670 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VIMP08670 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
VIMP08670 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VIMP08670 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VIMP08670 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.19■□□□□ 0.82
VIMP08670 AC239859.2-201ENST00000444165 318 ntBASIC20.19■□□□□ 0.82
VIMP08670 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.19■□□□□ 0.82
VIMP08670 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.19■□□□□ 0.82
VIMP08670 SMUG1P1-201ENST00000590640 811 ntBASIC20.19■□□□□ 0.82
VIMP08670 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.19■□□□□ 0.82
VIMP08670 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VIMP08670 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VIMP08670 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.19■□□□□ 0.82
VIMP08670 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VIMP08670 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VIMP08670 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms