Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA1O95477 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA1O95477 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC16.89■□□□□ 0.29
ABCA1O95477 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA1O95477 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA1O95477 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA1O95477 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
ABCA1O95477 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC16.89■□□□□ 0.29
ABCA1O95477 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
ABCA1O95477 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
ABCA1O95477 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.89■□□□□ 0.29
ABCA1O95477 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ABCA1O95477 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
ABCA1O95477 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.89■□□□□ 0.29
ABCA1O95477 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA1O95477 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA1O95477 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA1O95477 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
ABCA1O95477 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA1O95477 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA1O95477 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
ABCA1O95477 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA1O95477 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA1O95477 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.89■□□□□ 0.29
ABCA1O95477 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ABCA1O95477 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ABCA1O95477 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC16.89■□□□□ 0.29
ABCA1O95477 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.89■□□□□ 0.29
ABCA1O95477 C2orf69P4-201ENST00000565394 541 ntBASIC16.89■□□□□ 0.29
ABCA1O95477 AC110285.5-201ENST00000611501 352 ntBASIC16.89■□□□□ 0.29
ABCA1O95477 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
ABCA1O95477 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
ABCA1O95477 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
ABCA1O95477 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA1O95477 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.88■□□□□ 0.29
ABCA1O95477 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA1O95477 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC16.88■□□□□ 0.29
ABCA1O95477 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA1O95477 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA1O95477 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA1O95477 TMPOP1-202ENST00000424642 1267 ntBASIC16.88■□□□□ 0.29
ABCA1O95477 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC16.88■□□□□ 0.29
ABCA1O95477 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC16.88■□□□□ 0.29
ABCA1O95477 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
ABCA1O95477 AC113410.3-201ENST00000623366 203 ntBASIC16.88■□□□□ 0.29
ABCA1O95477 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA1O95477 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC16.88■□□□□ 0.29
ABCA1O95477 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA1O95477 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA1O95477 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA1O95477 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA1O95477 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
ABCA1O95477 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC16.88■□□□□ 0.29
ABCA1O95477 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA1O95477 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
ABCA1O95477 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.88■□□□□ 0.29
ABCA1O95477 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC16.88■□□□□ 0.29
ABCA1O95477 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
ABCA1O95477 KRASP1-201ENST00000407852 552 ntBASIC16.87■□□□□ 0.29
ABCA1O95477 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.87■□□□□ 0.29
ABCA1O95477 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA1O95477 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA1O95477 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA1O95477 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC16.87■□□□□ 0.29
ABCA1O95477 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA1O95477 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA1O95477 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA1O95477 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA1O95477 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
ABCA1O95477 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.87■□□□□ 0.29
ABCA1O95477 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.87■□□□□ 0.29
ABCA1O95477 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
ABCA1O95477 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
ABCA1O95477 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ABCA1O95477 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ABCA1O95477 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ABCA1O95477 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ABCA1O95477 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ABCA1O95477 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ABCA1O95477 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
ABCA1O95477 AP003071.4-201ENST00000562276 1284 ntBASIC16.86■□□□□ 0.29
ABCA1O95477 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
ABCA1O95477 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC16.86■□□□□ 0.29
ABCA1O95477 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC16.86■□□□□ 0.29
ABCA1O95477 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
ABCA1O95477 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ABCA1O95477 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC16.86■□□□□ 0.29
ABCA1O95477 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
ABCA1O95477 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ABCA1O95477 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
ABCA1O95477 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC16.86■□□□□ 0.29
ABCA1O95477 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.86■□□□□ 0.29
ABCA1O95477 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.86■□□□□ 0.29
ABCA1O95477 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ABCA1O95477 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
ABCA1O95477 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
ABCA1O95477 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ABCA1O95477 AC116050.2-201ENST00000612102 1779 ntBASIC16.86■□□□□ 0.29
ABCA1O95477 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
ABCA1O95477 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms