Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 AC013268.1-206ENST00000638368 961 ntBASIC18.04■□□□□ 0.48
VSX1Q9NZR4 AC112229.1-201ENST00000639295 961 ntBASIC18.04■□□□□ 0.48
VSX1Q9NZR4 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VSX1Q9NZR4 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 AC137761.2-201ENST00000561729 223 ntBASIC18.03■□□□□ 0.48
VSX1Q9NZR4 AC145350.3-201ENST00000569033 163 ntBASIC18.03■□□□□ 0.48
VSX1Q9NZR4 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 TCF3P1-201ENST00000423021 1937 ntBASIC18.03■□□□□ 0.48
VSX1Q9NZR4 AC112907.3-201ENST00000577781 2400 ntBASIC18.03■□□□□ 0.48
VSX1Q9NZR4 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
VSX1Q9NZR4 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.02■□□□□ 0.48
VSX1Q9NZR4 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
VSX1Q9NZR4 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
VSX1Q9NZR4 DPP3P2-201ENST00000416030 1696 ntBASIC18.02■□□□□ 0.47
VSX1Q9NZR4 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
VSX1Q9NZR4 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
VSX1Q9NZR4 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 AIRN-201ENST00000601203 4374 ntBASIC18.01■□□□□ 0.47
VSX1Q9NZR4 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 AC026271.2-201ENST00000428091 497 ntBASIC18.01■□□□□ 0.47
VSX1Q9NZR4 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 MFSD11-216ENST00000590393 1141 ntBASIC18.01■□□□□ 0.47
VSX1Q9NZR4 AL356652.1-201ENST00000615962 565 ntBASIC18.01■□□□□ 0.47
VSX1Q9NZR4 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 CYP21A1P-202ENST00000354927 1481 ntBASIC18.01■□□□□ 0.47
VSX1Q9NZR4 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VSX1Q9NZR4 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18■□□□□ 0.47
VSX1Q9NZR4 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18■□□□□ 0.47
VSX1Q9NZR4 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18■□□□□ 0.47
VSX1Q9NZR4 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
VSX1Q9NZR4 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18■□□□□ 0.47
VSX1Q9NZR4 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18■□□□□ 0.47
VSX1Q9NZR4 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18■□□□□ 0.47
VSX1Q9NZR4 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18■□□□□ 0.47
VSX1Q9NZR4 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms