Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SSU72Q9NP77 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
SSU72Q9NP77 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.06■□□□□ 0.8
SSU72Q9NP77 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SSU72Q9NP77 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SSU72Q9NP77 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SSU72Q9NP77 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SSU72Q9NP77 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SSU72Q9NP77 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SSU72Q9NP77 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SSU72Q9NP77 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SSU72Q9NP77 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SSU72Q9NP77 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SSU72Q9NP77 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SSU72Q9NP77 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SSU72Q9NP77 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SSU72Q9NP77 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.05■□□□□ 0.8
SSU72Q9NP77 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
SSU72Q9NP77 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.05■□□□□ 0.8
SSU72Q9NP77 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.05■□□□□ 0.8
SSU72Q9NP77 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SSU72Q9NP77 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.05■□□□□ 0.8
SSU72Q9NP77 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SSU72Q9NP77 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SSU72Q9NP77 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.05■□□□□ 0.8
SSU72Q9NP77 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.05■□□□□ 0.8
SSU72Q9NP77 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SSU72Q9NP77 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SSU72Q9NP77 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SSU72Q9NP77 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SSU72Q9NP77 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SSU72Q9NP77 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SSU72Q9NP77 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SSU72Q9NP77 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SSU72Q9NP77 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SSU72Q9NP77 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SSU72Q9NP77 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 AC010141.2-201ENST00000452426 721 ntBASIC20.04■□□□□ 0.8
SSU72Q9NP77 AC079140.4-201ENST00000507448 529 ntBASIC20.04■□□□□ 0.8
SSU72Q9NP77 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 AL358852.1-201ENST00000623174 1268 ntBASIC20.04■□□□□ 0.8
SSU72Q9NP77 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SSU72Q9NP77 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SSU72Q9NP77 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.04■□□□□ 0.8
SSU72Q9NP77 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SSU72Q9NP77 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.03■□□□□ 0.8
SSU72Q9NP77 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SSU72Q9NP77 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SSU72Q9NP77 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.03■□□□□ 0.8
SSU72Q9NP77 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SSU72Q9NP77 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.03■□□□□ 0.8
SSU72Q9NP77 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SSU72Q9NP77 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SSU72Q9NP77 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SSU72Q9NP77 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SSU72Q9NP77 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.03■□□□□ 0.8
SSU72Q9NP77 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SSU72Q9NP77 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SSU72Q9NP77 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SSU72Q9NP77 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SSU72Q9NP77 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SSU72Q9NP77 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.02■□□□□ 0.8
SSU72Q9NP77 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SSU72Q9NP77 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SSU72Q9NP77 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SSU72Q9NP77 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.02■□□□□ 0.8
SSU72Q9NP77 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SSU72Q9NP77 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SSU72Q9NP77 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.02■□□□□ 0.8
SSU72Q9NP77 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.02■□□□□ 0.8
SSU72Q9NP77 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.02■□□□□ 0.8
SSU72Q9NP77 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SSU72Q9NP77 AL354811.1-201ENST00000610286 706 ntBASIC20.02■□□□□ 0.8
SSU72Q9NP77 AL355001.2-201ENST00000620617 1191 ntBASIC20.02■□□□□ 0.8
SSU72Q9NP77 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SSU72Q9NP77 AC009237.14-201ENST00000609975 1594 ntBASIC20.02■□□□□ 0.8
SSU72Q9NP77 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.02■□□□□ 0.8
SSU72Q9NP77 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.02■□□□□ 0.8
SSU72Q9NP77 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.02■□□□□ 0.8
SSU72Q9NP77 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.02■□□□□ 0.79
SSU72Q9NP77 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SSU72Q9NP77 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
SSU72Q9NP77 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.01■□□□□ 0.79
SSU72Q9NP77 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SSU72Q9NP77 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms