Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC23.97■■□□□ 1.43
NEK1Q96PY6 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC23.97■■□□□ 1.43
NEK1Q96PY6 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
NEK1Q96PY6 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NEK1Q96PY6 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC23.96■■□□□ 1.43
NEK1Q96PY6 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC23.96■■□□□ 1.43
NEK1Q96PY6 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
NEK1Q96PY6 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
NEK1Q96PY6 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NEK1Q96PY6 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC23.96■■□□□ 1.43
NEK1Q96PY6 MIR663A-201ENST00000385250 93 ntBASIC23.96■■□□□ 1.43
NEK1Q96PY6 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NEK1Q96PY6 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC23.96■■□□□ 1.43
NEK1Q96PY6 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
NEK1Q96PY6 AC112907.3-201ENST00000577781 2400 ntBASIC23.96■■□□□ 1.43
NEK1Q96PY6 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
NEK1Q96PY6 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
NEK1Q96PY6 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
NEK1Q96PY6 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.43
NEK1Q96PY6 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.43
NEK1Q96PY6 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
NEK1Q96PY6 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
NEK1Q96PY6 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC23.95■■□□□ 1.43
NEK1Q96PY6 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
NEK1Q96PY6 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC23.95■■□□□ 1.42
NEK1Q96PY6 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC23.95■■□□□ 1.42
NEK1Q96PY6 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
NEK1Q96PY6 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
NEK1Q96PY6 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
NEK1Q96PY6 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
NEK1Q96PY6 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.95■■□□□ 1.42
NEK1Q96PY6 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23.95■■□□□ 1.42
NEK1Q96PY6 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC23.95■■□□□ 1.42
NEK1Q96PY6 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
NEK1Q96PY6 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
NEK1Q96PY6 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
NEK1Q96PY6 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC23.95■■□□□ 1.42
NEK1Q96PY6 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NEK1Q96PY6 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC23.94■■□□□ 1.42
NEK1Q96PY6 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NEK1Q96PY6 H19-201ENST00000411754 1788 ntTSL 5 BASIC23.94■■□□□ 1.42
NEK1Q96PY6 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NEK1Q96PY6 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NEK1Q96PY6 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
NEK1Q96PY6 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.94■■□□□ 1.42
NEK1Q96PY6 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
NEK1Q96PY6 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
NEK1Q96PY6 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC23.94■■□□□ 1.42
NEK1Q96PY6 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC23.94■■□□□ 1.42
NEK1Q96PY6 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
NEK1Q96PY6 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC23.94■■□□□ 1.42
NEK1Q96PY6 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NEK1Q96PY6 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NEK1Q96PY6 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
NEK1Q96PY6 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NEK1Q96PY6 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NEK1Q96PY6 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
NEK1Q96PY6 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
NEK1Q96PY6 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NEK1Q96PY6 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NEK1Q96PY6 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
NEK1Q96PY6 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NEK1Q96PY6 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.93■■□□□ 1.42
NEK1Q96PY6 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC23.93■■□□□ 1.42
NEK1Q96PY6 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC23.93■■□□□ 1.42
NEK1Q96PY6 KRT17P1-201ENST00000399211 1546 ntBASIC23.93■■□□□ 1.42
NEK1Q96PY6 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC23.93■■□□□ 1.42
NEK1Q96PY6 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.93■■□□□ 1.42
NEK1Q96PY6 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
NEK1Q96PY6 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NEK1Q96PY6 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NEK1Q96PY6 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NEK1Q96PY6 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC23.92■■□□□ 1.42
NEK1Q96PY6 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NEK1Q96PY6 SLC25A24-204ENST00000569674 2357 ntBASIC23.92■■□□□ 1.42
NEK1Q96PY6 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NEK1Q96PY6 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC23.92■■□□□ 1.42
NEK1Q96PY6 AF201337.1-201ENST00000520239 748 ntBASIC23.92■■□□□ 1.42
NEK1Q96PY6 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
NEK1Q96PY6 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NEK1Q96PY6 AC105036.2-201ENST00000569468 176 ntBASIC23.92■■□□□ 1.42
NEK1Q96PY6 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NEK1Q96PY6 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.92■■□□□ 1.42
NEK1Q96PY6 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NEK1Q96PY6 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
NEK1Q96PY6 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC23.92■■□□□ 1.42
NEK1Q96PY6 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NEK1Q96PY6 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NEK1Q96PY6 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
NEK1Q96PY6 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
NEK1Q96PY6 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NEK1Q96PY6 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NEK1Q96PY6 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NEK1Q96PY6 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC23.91■■□□□ 1.42
NEK1Q96PY6 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NEK1Q96PY6 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC23.91■■□□□ 1.42
NEK1Q96PY6 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
NEK1Q96PY6 PCDHAC2-203ENST00000615316 3011 ntBASIC23.91■■□□□ 1.42
NEK1Q96PY6 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
NEK1Q96PY6 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms