Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 PGM5P4-201ENST00000421970 445 ntBASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 HLA-B-256ENST00000639848 1089 ntBASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.44■□□□□ 0.7
CLIP3Q96DZ5 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 AC026366.1-201ENST00000488803 879 ntBASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 AP003097.1-201ENST00000530657 1135 ntBASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 AC008687.6-201ENST00000596318 630 ntBASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 AC066615.1-201ENST00000640911 628 ntBASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 AC092368.3-202ENST00000574180 1591 ntBASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLIP3Q96DZ5 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 AC087633.2-202ENST00000565166 1439 ntBASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLIP3Q96DZ5 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 PRORSD1P-201ENST00000295112 541 ntBASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLIP3Q96DZ5 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 PNMA6B-201ENST00000538162 1200 ntBASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
CLIP3Q96DZ5 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms